Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3314

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3313 and Psest_3314 are separated by 74 nucleotidesPsest_3314 and Psest_3315 are separated by 7 nucleotidesPsest_3315 and Psest_3316 are separated by 15 nucleotides Psest_3313: Psest_3313 - RNA polymerase sigma-54 factor, at 3,476,690 to 3,478,198 _3313 Psest_3314: Psest_3314 - ribosomal subunit interface protein, at 3,478,273 to 3,478,581 _3314 Psest_3315: Psest_3315 - PTS IIA-like nitrogen-regulatory protein PtsN, at 3,478,589 to 3,479,053 _3315 Psest_3316: Psest_3316 - Predicted P-loop-containing kinase, at 3,479,069 to 3,479,926 _3316 Position (kb) 3478 3479Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3478.233 kb on + strandat 3478.266 kb on + strandat 3478.272 kb on + strandat 3478.307 kb on + strand, within Psest_3314at 3478.307 kb on + strand, within Psest_3314at 3478.307 kb on + strand, within Psest_3314at 3478.327 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.550 kb on + strand, within Psest_3314at 3478.550 kb on + strand, within Psest_3314at 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.086 kb on - strandat 3479.086 kb on - strandat 3479.086 kb on - strandat 3479.086 kb on - strandat 3479.086 kb on - strandat 3479.127 kb on + strandat 3479.128 kb on - strandat 3479.128 kb on - strandat 3479.147 kb on + strandat 3479.147 kb on + strandat 3479.210 kb on - strand, within Psest_3316at 3479.217 kb on + strand, within Psest_3316at 3479.218 kb on - strand, within Psest_3316at 3479.314 kb on + strand, within Psest_3316at 3479.334 kb on - strand, within Psest_3316at 3479.499 kb on + strand, within Psest_3316at 3479.499 kb on + strand, within Psest_3316at 3479.499 kb on + strand, within Psest_3316at 3479.500 kb on - strand, within Psest_3316at 3479.500 kb on - strand, within Psest_3316at 3479.500 kb on - strand, within Psest_3316at 3479.500 kb on - strand, within Psest_3316at 3479.500 kb on - strand, within Psest_3316at 3479.500 kb on - strand, within Psest_3316

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,478,233 + +2.1
3,478,266 + +0.0
3,478,272 + -0.2
3,478,307 + Psest_3314 0.11 +0.0
3,478,307 + Psest_3314 0.11 -1.1
3,478,307 + Psest_3314 0.11 -2.2
3,478,327 + Psest_3314 0.17 -1.6
3,478,483 + Psest_3314 0.68 -1.2
3,478,483 + Psest_3314 0.68 -1.2
3,478,483 + Psest_3314 0.68 -1.5
3,478,483 + Psest_3314 0.68 -1.4
3,478,483 + Psest_3314 0.68 +0.3
3,478,483 + Psest_3314 0.68 -3.0
3,478,483 + Psest_3314 0.68 -0.2
3,478,483 + Psest_3314 0.68 -2.1
3,478,483 + Psest_3314 0.68 -1.0
3,478,483 + Psest_3314 0.68 -2.8
3,478,483 + Psest_3314 0.68 -0.6
3,478,483 + Psest_3314 0.68 +0.3
3,478,483 + Psest_3314 0.68 +0.8
3,478,483 + Psest_3314 0.68 -1.6
3,478,483 + Psest_3314 0.68 +0.6
3,478,483 + Psest_3314 0.68 -2.6
3,478,483 + Psest_3314 0.68 -1.3
3,478,483 + Psest_3314 0.68 -0.1
3,478,483 + Psest_3314 0.68 -0.6
3,478,483 + Psest_3314 0.68 -0.0
3,478,483 + Psest_3314 0.68 -0.6
3,478,550 + Psest_3314 0.90 +0.4
3,478,550 + Psest_3314 0.90 +1.6
3,479,085 + -0.9
3,479,085 + +0.8
3,479,085 + +2.1
3,479,085 + +0.2
3,479,085 + +0.6
3,479,085 + +1.4
3,479,086 - +1.9
3,479,086 - +1.4
3,479,086 - +1.5
3,479,086 - +0.6
3,479,086 - +0.9
3,479,127 + +0.7
3,479,128 - +1.1
3,479,128 - +0.8
3,479,147 + +0.8
3,479,147 + +1.3
3,479,210 - Psest_3316 0.16 +0.8
3,479,217 + Psest_3316 0.17 +1.4
3,479,218 - Psest_3316 0.17 +2.6
3,479,314 + Psest_3316 0.29 +2.1
3,479,334 - Psest_3316 0.31 +0.7
3,479,499 + Psest_3316 0.50 +1.0
3,479,499 + Psest_3316 0.50 -1.4
3,479,499 + Psest_3316 0.50 -0.6
3,479,500 - Psest_3316 0.50 +1.9
3,479,500 - Psest_3316 0.50 +3.5
3,479,500 - Psest_3316 0.50 +2.3
3,479,500 - Psest_3316 0.50 +1.8
3,479,500 - Psest_3316 0.50 +1.7
3,479,500 - Psest_3316 0.50 -0.1

Or see this region's nucleotide sequence