Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3294

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3293 and Psest_3294 are separated by 11 nucleotidesPsest_3294 and Psest_3295 are separated by 185 nucleotides Psest_3293: Psest_3293 - sulfate adenylyltransferase, large subunit, at 3,459,051 to 3,460,949 _3293 Psest_3294: Psest_3294 - sulfate adenylyltransferase, small subunit, at 3,460,961 to 3,461,878 _3294 Psest_3295: Psest_3295 - dinuclear metal center protein, YbgI/SA1388 family, at 3,462,064 to 3,462,822 _3295 Position (kb) 3460 3461 3462Strain fitness (log2 ratio) -3 -2 -1 0 1at 3460.963 kb on - strandat 3460.963 kb on - strandat 3460.963 kb on - strandat 3460.963 kb on - strandat 3461.936 kb on - strandat 3461.936 kb on - strandat 3461.946 kb on + strandat 3461.947 kb on - strandat 3461.947 kb on - strandat 3461.954 kb on - strandat 3461.976 kb on - strandat 3461.990 kb on + strandat 3462.023 kb on + strandat 3462.023 kb on + strandat 3462.023 kb on + strandat 3462.023 kb on + strandat 3462.024 kb on - strandat 3462.024 kb on - strandat 3462.024 kb on - strandat 3462.039 kb on + strandat 3462.075 kb on + strandat 3462.122 kb on + strandat 3462.122 kb on + strandat 3462.224 kb on - strand, within Psest_3295at 3462.276 kb on - strand, within Psest_3295at 3462.305 kb on - strand, within Psest_3295at 3462.353 kb on - strand, within Psest_3295at 3462.495 kb on + strand, within Psest_3295at 3462.637 kb on + strand, within Psest_3295at 3462.637 kb on + strand, within Psest_3295at 3462.713 kb on - strand, within Psest_3295at 3462.752 kb on + strandat 3462.752 kb on + strandat 3462.752 kb on + strandat 3462.808 kb on - strandat 3462.828 kb on + strandat 3462.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,460,963 - +0.0
3,460,963 - -0.3
3,460,963 - +0.1
3,460,963 - +0.7
3,461,936 - +0.9
3,461,936 - +0.9
3,461,946 + -1.4
3,461,947 - -0.3
3,461,947 - -0.6
3,461,954 - +0.3
3,461,976 - +0.7
3,461,990 + -1.6
3,462,023 + +0.0
3,462,023 + +0.1
3,462,023 + -1.5
3,462,023 + +1.0
3,462,024 - -0.3
3,462,024 - -1.7
3,462,024 - +0.4
3,462,039 + +0.4
3,462,075 + -1.1
3,462,122 + +0.1
3,462,122 + -0.3
3,462,224 - Psest_3295 0.21 -0.6
3,462,276 - Psest_3295 0.28 +0.0
3,462,305 - Psest_3295 0.32 -0.7
3,462,353 - Psest_3295 0.38 -0.5
3,462,495 + Psest_3295 0.57 -0.5
3,462,637 + Psest_3295 0.75 -1.3
3,462,637 + Psest_3295 0.75 +0.0
3,462,713 - Psest_3295 0.86 -0.1
3,462,752 + -0.0
3,462,752 + -2.9
3,462,752 + +1.0
3,462,808 - +0.8
3,462,828 + -0.3
3,462,829 - -3.1

Or see this region's nucleotide sequence