Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2728

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2727 and Psest_2728 are separated by 109 nucleotidesPsest_2728 and Psest_2729 are separated by 60 nucleotides Psest_2727: Psest_2727 - Small-conductance mechanosensitive channel, at 2,913,465 to 2,914,607 _2727 Psest_2728: Psest_2728 - Acyl-CoA dehydrogenases, at 2,914,717 to 2,917,183 _2728 Psest_2729: Psest_2729 - Signal transduction histidine kinase, at 2,917,244 to 2,918,845 _2729 Position (kb) 2914 2915 2916 2917 2918Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2914.182 kb on + strand, within Psest_2727at 2914.182 kb on + strand, within Psest_2727at 2914.182 kb on + strand, within Psest_2727at 2914.182 kb on + strand, within Psest_2727at 2914.182 kb on + strand, within Psest_2727at 2914.182 kb on + strand, within Psest_2727at 2914.182 kb on + strand, within Psest_2727at 2914.182 kb on + strand, within Psest_2727at 2914.183 kb on - strand, within Psest_2727at 2914.183 kb on - strand, within Psest_2727at 2914.183 kb on - strand, within Psest_2727at 2914.183 kb on - strand, within Psest_2727at 2914.183 kb on - strand, within Psest_2727at 2914.183 kb on - strand, within Psest_2727at 2914.183 kb on - strand, within Psest_2727at 2914.230 kb on + strand, within Psest_2727at 2914.230 kb on + strand, within Psest_2727at 2914.230 kb on + strand, within Psest_2727at 2914.230 kb on + strand, within Psest_2727at 2914.230 kb on + strand, within Psest_2727at 2914.231 kb on - strand, within Psest_2727at 2914.231 kb on - strand, within Psest_2727at 2914.365 kb on + strand, within Psest_2727at 2914.365 kb on + strand, within Psest_2727at 2914.365 kb on + strand, within Psest_2727at 2914.366 kb on - strand, within Psest_2727at 2914.386 kb on + strand, within Psest_2727at 2914.386 kb on + strand, within Psest_2727at 2914.387 kb on - strand, within Psest_2727at 2914.387 kb on - strand, within Psest_2727at 2914.387 kb on - strand, within Psest_2727at 2914.396 kb on - strand, within Psest_2727at 2914.513 kb on + strandat 2914.514 kb on - strandat 2914.637 kb on + strandat 2914.701 kb on + strandat 2914.702 kb on - strandat 2914.813 kb on + strandat 2914.813 kb on + strandat 2914.813 kb on + strandat 2914.813 kb on + strandat 2914.813 kb on + strandat 2914.857 kb on - strandat 2914.857 kb on - strandat 2914.901 kb on + strandat 2914.902 kb on - strandat 2914.925 kb on - strandat 2914.925 kb on - strandat 2914.925 kb on - strandat 2915.194 kb on + strand, within Psest_2728at 2915.194 kb on + strand, within Psest_2728at 2915.194 kb on + strand, within Psest_2728at 2915.194 kb on + strand, within Psest_2728at 2915.195 kb on - strand, within Psest_2728at 2915.263 kb on + strand, within Psest_2728at 2915.368 kb on + strand, within Psest_2728at 2915.368 kb on + strand, within Psest_2728at 2915.557 kb on + strand, within Psest_2728at 2915.557 kb on + strand, within Psest_2728at 2915.558 kb on - strand, within Psest_2728at 2915.558 kb on - strand, within Psest_2728at 2915.609 kb on - strand, within Psest_2728at 2915.609 kb on - strand, within Psest_2728at 2915.609 kb on - strand, within Psest_2728at 2915.653 kb on - strand, within Psest_2728at 2915.893 kb on + strand, within Psest_2728at 2915.893 kb on + strand, within Psest_2728at 2915.894 kb on - strand, within Psest_2728at 2915.894 kb on - strand, within Psest_2728at 2915.894 kb on - strand, within Psest_2728at 2915.894 kb on - strand, within Psest_2728at 2916.102 kb on - strand, within Psest_2728at 2916.188 kb on + strand, within Psest_2728at 2916.188 kb on + strand, within Psest_2728at 2916.188 kb on + strand, within Psest_2728at 2916.188 kb on + strand, within Psest_2728at 2916.189 kb on - strand, within Psest_2728at 2916.189 kb on - strand, within Psest_2728at 2916.479 kb on + strand, within Psest_2728at 2916.479 kb on + strand, within Psest_2728at 2916.480 kb on - strand, within Psest_2728at 2916.480 kb on - strand, within Psest_2728at 2916.597 kb on + strand, within Psest_2728at 2916.598 kb on - strand, within Psest_2728at 2916.598 kb on - strand, within Psest_2728at 2916.598 kb on - strand, within Psest_2728at 2916.598 kb on - strand, within Psest_2728at 2916.611 kb on + strand, within Psest_2728at 2916.612 kb on - strand, within Psest_2728at 2916.612 kb on - strand, within Psest_2728at 2916.612 kb on - strand, within Psest_2728at 2916.723 kb on + strand, within Psest_2728at 2916.723 kb on + strand, within Psest_2728at 2916.784 kb on - strand, within Psest_2728at 2916.784 kb on - strand, within Psest_2728at 2916.822 kb on + strand, within Psest_2728at 2916.822 kb on + strand, within Psest_2728at 2916.822 kb on + strand, within Psest_2728at 2916.822 kb on + strand, within Psest_2728at 2916.822 kb on + strand, within Psest_2728at 2916.823 kb on - strand, within Psest_2728at 2916.823 kb on - strand, within Psest_2728at 2916.823 kb on - strand, within Psest_2728at 2916.899 kb on + strand, within Psest_2728at 2916.900 kb on - strand, within Psest_2728at 2916.900 kb on - strand, within Psest_2728at 2916.900 kb on - strand, within Psest_2728at 2916.900 kb on - strand, within Psest_2728at 2917.014 kb on + strandat 2917.014 kb on + strandat 2917.015 kb on - strandat 2917.015 kb on - strandat 2917.332 kb on + strandat 2917.333 kb on - strandat 2917.333 kb on - strandat 2917.333 kb on - strandat 2917.570 kb on + strand, within Psest_2729at 2917.747 kb on - strand, within Psest_2729at 2917.810 kb on - strand, within Psest_2729at 2917.810 kb on - strand, within Psest_2729at 2917.810 kb on - strand, within Psest_2729at 2917.810 kb on - strand, within Psest_2729at 2917.955 kb on - strand, within Psest_2729at 2918.094 kb on + strand, within Psest_2729at 2918.095 kb on - strand, within Psest_2729at 2918.095 kb on - strand, within Psest_2729at 2918.095 kb on - strand, within Psest_2729at 2918.095 kb on - strand, within Psest_2729at 2918.095 kb on - strand, within Psest_2729at 2918.095 kb on - strand, within Psest_2729at 2918.172 kb on + strand, within Psest_2729at 2918.172 kb on + strand, within Psest_2729

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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2,914,182 + Psest_2727 0.63 +0.4
2,914,182 + Psest_2727 0.63 +1.1
2,914,182 + Psest_2727 0.63 +0.4
2,914,182 + Psest_2727 0.63 +1.6
2,914,182 + Psest_2727 0.63 +0.0
2,914,182 + Psest_2727 0.63 +0.3
2,914,182 + Psest_2727 0.63 +0.8
2,914,182 + Psest_2727 0.63 +0.9
2,914,183 - Psest_2727 0.63 +0.5
2,914,183 - Psest_2727 0.63 +1.9
2,914,183 - Psest_2727 0.63 +0.2
2,914,183 - Psest_2727 0.63 +0.5
2,914,183 - Psest_2727 0.63 +0.2
2,914,183 - Psest_2727 0.63 -0.6
2,914,183 - Psest_2727 0.63 +1.1
2,914,230 + Psest_2727 0.67 -1.5
2,914,230 + Psest_2727 0.67 -1.2
2,914,230 + Psest_2727 0.67 +0.8
2,914,230 + Psest_2727 0.67 -0.8
2,914,230 + Psest_2727 0.67 +0.6
2,914,231 - Psest_2727 0.67 -1.4
2,914,231 - Psest_2727 0.67 -0.5
2,914,365 + Psest_2727 0.79 -0.6
2,914,365 + Psest_2727 0.79 -0.1
2,914,365 + Psest_2727 0.79 +1.0
2,914,366 - Psest_2727 0.79 +0.2
2,914,386 + Psest_2727 0.81 -1.5
2,914,386 + Psest_2727 0.81 +0.4
2,914,387 - Psest_2727 0.81 -0.4
2,914,387 - Psest_2727 0.81 -0.4
2,914,387 - Psest_2727 0.81 +1.0
2,914,396 - Psest_2727 0.81 -0.5
2,914,513 + +0.2
2,914,514 - +1.7
2,914,637 + +0.2
2,914,701 + -0.2
2,914,702 - -0.6
2,914,813 + +0.1
2,914,813 + -0.6
2,914,813 + -1.1
2,914,813 + +0.7
2,914,813 + +0.6
2,914,857 - -0.7
2,914,857 - -0.1
2,914,901 + -1.0
2,914,902 - +0.4
2,914,925 - -0.1
2,914,925 - -0.4
2,914,925 - +2.6
2,915,194 + Psest_2728 0.19 -1.3
2,915,194 + Psest_2728 0.19 -0.2
2,915,194 + Psest_2728 0.19 -0.7
2,915,194 + Psest_2728 0.19 -0.6
2,915,195 - Psest_2728 0.19 +1.0
2,915,263 + Psest_2728 0.22 -2.6
2,915,368 + Psest_2728 0.26 -3.5
2,915,368 + Psest_2728 0.26 -0.3
2,915,557 + Psest_2728 0.34 +2.5
2,915,557 + Psest_2728 0.34 -0.3
2,915,558 - Psest_2728 0.34 -0.1
2,915,558 - Psest_2728 0.34 -1.6
2,915,609 - Psest_2728 0.36 +0.1
2,915,609 - Psest_2728 0.36 +0.7
2,915,609 - Psest_2728 0.36 +0.4
2,915,653 - Psest_2728 0.38 -2.7
2,915,893 + Psest_2728 0.48 -0.8
2,915,893 + Psest_2728 0.48 -1.6
2,915,894 - Psest_2728 0.48 -0.2
2,915,894 - Psest_2728 0.48 -0.5
2,915,894 - Psest_2728 0.48 +0.1
2,915,894 - Psest_2728 0.48 +0.5
2,916,102 - Psest_2728 0.56 +0.8
2,916,188 + Psest_2728 0.60 -3.6
2,916,188 + Psest_2728 0.60 -0.2
2,916,188 + Psest_2728 0.60 -0.4
2,916,188 + Psest_2728 0.60 +0.0
2,916,189 - Psest_2728 0.60 -0.3
2,916,189 - Psest_2728 0.60 +1.4
2,916,479 + Psest_2728 0.71 -0.3
2,916,479 + Psest_2728 0.71 +0.6
2,916,480 - Psest_2728 0.71 -1.4
2,916,480 - Psest_2728 0.71 -0.2
2,916,597 + Psest_2728 0.76 -1.0
2,916,598 - Psest_2728 0.76 -2.0
2,916,598 - Psest_2728 0.76 +0.8
2,916,598 - Psest_2728 0.76 -0.6
2,916,598 - Psest_2728 0.76 -2.7
2,916,611 + Psest_2728 0.77 -0.6
2,916,612 - Psest_2728 0.77 +0.7
2,916,612 - Psest_2728 0.77 +0.1
2,916,612 - Psest_2728 0.77 -0.2
2,916,723 + Psest_2728 0.81 +0.9
2,916,723 + Psest_2728 0.81 +0.6
2,916,784 - Psest_2728 0.84 +0.8
2,916,784 - Psest_2728 0.84 -0.7
2,916,822 + Psest_2728 0.85 -0.0
2,916,822 + Psest_2728 0.85 -0.2
2,916,822 + Psest_2728 0.85 +0.4
2,916,822 + Psest_2728 0.85 -0.4
2,916,822 + Psest_2728 0.85 -1.1
2,916,823 - Psest_2728 0.85 -1.9
2,916,823 - Psest_2728 0.85 -1.1
2,916,823 - Psest_2728 0.85 +1.4
2,916,899 + Psest_2728 0.88 +0.0
2,916,900 - Psest_2728 0.88 -0.4
2,916,900 - Psest_2728 0.88 +0.5
2,916,900 - Psest_2728 0.88 +0.4
2,916,900 - Psest_2728 0.88 +0.4
2,917,014 + +0.7
2,917,014 + -1.5
2,917,015 - +0.5
2,917,015 - +0.3
2,917,332 + +0.5
2,917,333 - +0.7
2,917,333 - +0.4
2,917,333 - -2.2
2,917,570 + Psest_2729 0.20 +0.5
2,917,747 - Psest_2729 0.31 -0.2
2,917,810 - Psest_2729 0.35 +0.1
2,917,810 - Psest_2729 0.35 +0.1
2,917,810 - Psest_2729 0.35 -0.1
2,917,810 - Psest_2729 0.35 -1.0
2,917,955 - Psest_2729 0.44 -3.0
2,918,094 + Psest_2729 0.53 +1.7
2,918,095 - Psest_2729 0.53 -0.6
2,918,095 - Psest_2729 0.53 -0.6
2,918,095 - Psest_2729 0.53 +0.0
2,918,095 - Psest_2729 0.53 +0.5
2,918,095 - Psest_2729 0.53 +0.2
2,918,095 - Psest_2729 0.53 +0.3
2,918,172 + Psest_2729 0.58 -0.8
2,918,172 + Psest_2729 0.58 +0.5

Or see this region's nucleotide sequence