Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0236

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0235 and Psest_0236 are separated by 62 nucleotidesPsest_0236 and Psest_0237 are separated by 102 nucleotidesPsest_0237 and Psest_0238 are separated by 129 nucleotides Psest_0235: Psest_0235 - isoform II., at 245,886 to 246,734 _0235 Psest_0236: Psest_0236 - Predicted SAM-dependent methyltransferases, at 246,797 to 247,993 _0236 Psest_0237: Psest_0237 - intracellular protease, PfpI family, at 248,096 to 248,635 _0237 Psest_0238: Psest_0238 - Predicted signal transduction protein, at 248,765 to 249,631 _0238 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 245.826 kb on + strandat 245.851 kb on - strandat 245.851 kb on - strandat 245.851 kb on - strandat 245.857 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.907 kb on + strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.911 kb on + strandat 245.911 kb on + strandat 245.912 kb on - strandat 246.022 kb on - strand, within Psest_0235at 246.147 kb on + strand, within Psest_0235at 246.147 kb on + strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.249 kb on + strand, within Psest_0235at 246.249 kb on + strand, within Psest_0235at 246.250 kb on - strand, within Psest_0235at 246.276 kb on + strand, within Psest_0235at 246.276 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.318 kb on - strand, within Psest_0235at 246.318 kb on - strand, within Psest_0235at 246.402 kb on + strand, within Psest_0235at 246.403 kb on - strand, within Psest_0235at 246.561 kb on + strand, within Psest_0235at 246.562 kb on - strand, within Psest_0235at 246.669 kb on + strandat 246.712 kb on + strandat 246.712 kb on + strandat 246.713 kb on - strandat 246.713 kb on - strandat 246.713 kb on - strandat 246.838 kb on - strandat 246.838 kb on - strandat 247.287 kb on - strand, within Psest_0236at 247.305 kb on + strand, within Psest_0236at 247.305 kb on + strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.341 kb on + strand, within Psest_0236at 247.341 kb on + strand, within Psest_0236at 247.341 kb on + strand, within Psest_0236at 247.341 kb on + strand, within Psest_0236at 247.342 kb on - strand, within Psest_0236at 247.342 kb on - strand, within Psest_0236at 247.342 kb on - strand, within Psest_0236at 247.377 kb on + strand, within Psest_0236at 247.377 kb on + strand, within Psest_0236at 247.377 kb on + strand, within Psest_0236at 247.378 kb on - strand, within Psest_0236at 247.483 kb on - strand, within Psest_0236at 247.483 kb on - strand, within Psest_0236at 247.532 kb on + strand, within Psest_0236at 247.532 kb on + strand, within Psest_0236at 247.556 kb on + strand, within Psest_0236at 247.556 kb on + strand, within Psest_0236at 247.557 kb on - strand, within Psest_0236at 247.557 kb on - strand, within Psest_0236at 247.674 kb on + strand, within Psest_0236at 247.674 kb on + strand, within Psest_0236at 247.924 kb on - strandat 247.924 kb on - strandat 247.924 kb on - strandat 248.026 kb on - strandat 248.419 kb on - strand, within Psest_0237at 248.453 kb on + strand, within Psest_0237at 248.454 kb on - strand, within Psest_0237at 248.600 kb on + strandat 248.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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245,826 + +0.3
245,851 - +0.6
245,851 - -2.3
245,851 - +0.2
245,857 + +0.8
245,859 + +1.0
245,859 + -0.1
245,859 + -0.3
245,859 + -0.8
245,859 + +1.2
245,907 + -0.4
245,908 - -0.3
245,908 - +0.9
245,908 - -1.5
245,908 - +0.5
245,908 - -1.1
245,911 + +0.2
245,911 + +1.7
245,912 - +1.1
246,022 - Psest_0235 0.16 +0.2
246,147 + Psest_0235 0.31 +1.2
246,147 + Psest_0235 0.31 -0.0
246,148 - Psest_0235 0.31 -0.8
246,148 - Psest_0235 0.31 -0.5
246,148 - Psest_0235 0.31 +0.1
246,249 + Psest_0235 0.43 +1.3
246,249 + Psest_0235 0.43 -0.8
246,250 - Psest_0235 0.43 +1.6
246,276 + Psest_0235 0.46 -0.5
246,276 + Psest_0235 0.46 +0.5
246,285 + Psest_0235 0.47 +0.1
246,285 + Psest_0235 0.47 -0.4
246,285 + Psest_0235 0.47 +2.1
246,285 + Psest_0235 0.47 -0.2
246,285 + Psest_0235 0.47 +3.2
246,285 + Psest_0235 0.47 -1.3
246,285 + Psest_0235 0.47 +0.3
246,285 + Psest_0235 0.47 -1.3
246,285 + Psest_0235 0.47 +0.4
246,286 - Psest_0235 0.47 +0.7
246,286 - Psest_0235 0.47 -2.8
246,286 - Psest_0235 0.47 -0.8
246,286 - Psest_0235 0.47 +0.1
246,286 - Psest_0235 0.47 +1.4
246,286 - Psest_0235 0.47 +1.1
246,286 - Psest_0235 0.47 +1.3
246,286 - Psest_0235 0.47 -0.3
246,318 - Psest_0235 0.51 -0.6
246,318 - Psest_0235 0.51 -1.3
246,402 + Psest_0235 0.61 -0.0
246,403 - Psest_0235 0.61 +0.9
246,561 + Psest_0235 0.80 +0.0
246,562 - Psest_0235 0.80 -1.5
246,669 + -0.4
246,712 + -1.1
246,712 + -0.3
246,713 - +0.4
246,713 - -1.2
246,713 - -0.4
246,838 - -0.3
246,838 - +1.5
247,287 - Psest_0236 0.41 -1.9
247,305 + Psest_0236 0.42 -0.1
247,305 + Psest_0236 0.42 +0.7
247,306 - Psest_0236 0.43 -1.3
247,306 - Psest_0236 0.43 +0.8
247,306 - Psest_0236 0.43 +0.3
247,306 - Psest_0236 0.43 +1.1
247,306 - Psest_0236 0.43 +0.8
247,341 + Psest_0236 0.45 +0.2
247,341 + Psest_0236 0.45 +1.0
247,341 + Psest_0236 0.45 -2.3
247,341 + Psest_0236 0.45 -1.0
247,342 - Psest_0236 0.46 +0.8
247,342 - Psest_0236 0.46 +0.9
247,342 - Psest_0236 0.46 -0.8
247,377 + Psest_0236 0.48 +0.3
247,377 + Psest_0236 0.48 +0.3
247,377 + Psest_0236 0.48 +0.7
247,378 - Psest_0236 0.49 +0.8
247,483 - Psest_0236 0.57 -0.3
247,483 - Psest_0236 0.57 +0.8
247,532 + Psest_0236 0.61 -1.0
247,532 + Psest_0236 0.61 +0.0
247,556 + Psest_0236 0.63 +2.4
247,556 + Psest_0236 0.63 -1.3
247,557 - Psest_0236 0.63 +0.6
247,557 - Psest_0236 0.63 -1.1
247,674 + Psest_0236 0.73 +0.3
247,674 + Psest_0236 0.73 -0.6
247,924 - +0.2
247,924 - -0.4
247,924 - +1.2
248,026 - -0.8
248,419 - Psest_0237 0.60 +0.1
248,453 + Psest_0237 0.66 +0.0
248,454 - Psest_0237 0.66 +0.9
248,600 + -1.2
248,601 - +0.8

Or see this region's nucleotide sequence