Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2365

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2363 and Psest_2364 overlap by 4 nucleotidesPsest_2364 and Psest_2365 are separated by 2 nucleotidesPsest_2365 and Psest_2366 are separated by 3 nucleotides Psest_2363: Psest_2363 - hypothetical protein, at 2,517,117 to 2,517,926 _2363 Psest_2364: Psest_2364 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,517,923 to 2,518,801 _2364 Psest_2365: Psest_2365 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,518,804 to 2,519,643 _2365 Psest_2366: Psest_2366 - Homoserine acetyltransferase, at 2,519,647 to 2,520,669 _2366 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2517.905 kb on + strandat 2518.289 kb on + strand, within Psest_2364at 2518.289 kb on + strand, within Psest_2364at 2518.290 kb on - strand, within Psest_2364at 2518.290 kb on - strand, within Psest_2364at 2518.349 kb on + strand, within Psest_2364at 2518.350 kb on - strand, within Psest_2364at 2518.350 kb on - strand, within Psest_2364at 2518.350 kb on - strand, within Psest_2364at 2518.616 kb on + strand, within Psest_2364at 2518.617 kb on - strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2519.431 kb on + strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.660 kb on - strandat 2519.807 kb on + strand, within Psest_2366at 2519.807 kb on + strand, within Psest_2366at 2519.808 kb on - strand, within Psest_2366at 2519.808 kb on - strand, within Psest_2366at 2519.808 kb on - strand, within Psest_2366at 2519.916 kb on + strand, within Psest_2366at 2519.917 kb on - strand, within Psest_2366at 2519.917 kb on - strand, within Psest_2366at 2520.029 kb on + strand, within Psest_2366at 2520.030 kb on - strand, within Psest_2366at 2520.044 kb on + strand, within Psest_2366at 2520.045 kb on - strand, within Psest_2366at 2520.045 kb on - strand, within Psest_2366at 2520.105 kb on - strand, within Psest_2366at 2520.308 kb on + strand, within Psest_2366at 2520.308 kb on + strand, within Psest_2366at 2520.309 kb on - strand, within Psest_2366at 2520.309 kb on - strand, within Psest_2366at 2520.340 kb on + strand, within Psest_2366at 2520.340 kb on + strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.521 kb on + strand, within Psest_2366at 2520.522 kb on - strand, within Psest_2366at 2520.522 kb on - strand, within Psest_2366

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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2,517,905 + -0.2
2,518,289 + Psest_2364 0.42 -0.3
2,518,289 + Psest_2364 0.42 -1.1
2,518,290 - Psest_2364 0.42 -0.4
2,518,290 - Psest_2364 0.42 -0.8
2,518,349 + Psest_2364 0.48 +0.2
2,518,350 - Psest_2364 0.49 -1.3
2,518,350 - Psest_2364 0.49 -0.6
2,518,350 - Psest_2364 0.49 -2.4
2,518,616 + Psest_2364 0.79 +1.8
2,518,617 - Psest_2364 0.79 -0.2
2,518,685 + Psest_2364 0.87 -0.0
2,518,685 + Psest_2364 0.87 -0.2
2,518,685 + Psest_2364 0.87 +0.0
2,518,685 + Psest_2364 0.87 -2.8
2,518,685 + Psest_2364 0.87 -0.5
2,518,685 + Psest_2364 0.87 +0.2
2,518,686 - Psest_2364 0.87 -0.4
2,518,686 - Psest_2364 0.87 -0.4
2,518,686 - Psest_2364 0.87 -2.1
2,519,431 + Psest_2365 0.75 -1.5
2,519,432 - Psest_2365 0.75 +0.9
2,519,432 - Psest_2365 0.75 +1.5
2,519,432 - Psest_2365 0.75 +0.3
2,519,432 - Psest_2365 0.75 +1.1
2,519,432 - Psest_2365 0.75 +1.0
2,519,660 - +0.1
2,519,807 + Psest_2366 0.16 -0.3
2,519,807 + Psest_2366 0.16 -0.2
2,519,808 - Psest_2366 0.16 +1.6
2,519,808 - Psest_2366 0.16 +0.7
2,519,808 - Psest_2366 0.16 +1.1
2,519,916 + Psest_2366 0.26 +0.3
2,519,917 - Psest_2366 0.26 -0.8
2,519,917 - Psest_2366 0.26 -0.6
2,520,029 + Psest_2366 0.37 +0.4
2,520,030 - Psest_2366 0.37 +0.4
2,520,044 + Psest_2366 0.39 +0.8
2,520,045 - Psest_2366 0.39 -1.3
2,520,045 - Psest_2366 0.39 +1.3
2,520,105 - Psest_2366 0.45 +0.6
2,520,308 + Psest_2366 0.65 +0.2
2,520,308 + Psest_2366 0.65 +0.9
2,520,309 - Psest_2366 0.65 +0.3
2,520,309 - Psest_2366 0.65 -1.4
2,520,340 + Psest_2366 0.68 +0.1
2,520,340 + Psest_2366 0.68 -0.6
2,520,341 - Psest_2366 0.68 -0.3
2,520,341 - Psest_2366 0.68 +1.2
2,520,341 - Psest_2366 0.68 -0.1
2,520,341 - Psest_2366 0.68 -0.1
2,520,341 - Psest_2366 0.68 +1.1
2,520,341 - Psest_2366 0.68 +0.5
2,520,341 - Psest_2366 0.68 -1.2
2,520,341 - Psest_2366 0.68 +1.8
2,520,521 + Psest_2366 0.85 -0.1
2,520,522 - Psest_2366 0.86 +0.5
2,520,522 - Psest_2366 0.86 -0.1

Or see this region's nucleotide sequence