Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2519

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2517 and Psest_2518 overlap by 10 nucleotidesPsest_2518 and Psest_2519 are separated by 29 nucleotidesPsest_2519 and Psest_2520 are separated by 65 nucleotides Psest_2517: Psest_2517 - hypothetical protein, at 2,696,197 to 2,696,556 _2517 Psest_2518: Psest_2518 - Predicted membrane protein, at 2,696,547 to 2,697,392 _2518 Psest_2519: Psest_2519 - Predicted redox protein, regulator of disulfide bond formation, at 2,697,422 to 2,697,673 _2519 Psest_2520: Psest_2520 - Predicted SAM-dependent methyltransferase, at 2,697,739 to 2,698,788 _2520 Position (kb) 2697 2698Strain fitness (log2 ratio) -2 -1 0 1at 2696.582 kb on + strandat 2696.582 kb on + strandat 2696.585 kb on + strandat 2696.586 kb on - strandat 2696.586 kb on - strandat 2696.706 kb on + strand, within Psest_2518at 2696.707 kb on - strand, within Psest_2518at 2696.707 kb on - strand, within Psest_2518at 2696.942 kb on - strand, within Psest_2518at 2696.992 kb on + strand, within Psest_2518at 2696.993 kb on - strand, within Psest_2518at 2696.993 kb on - strand, within Psest_2518at 2697.020 kb on + strand, within Psest_2518at 2697.020 kb on + strand, within Psest_2518at 2697.020 kb on + strand, within Psest_2518at 2697.021 kb on - strand, within Psest_2518at 2697.021 kb on - strand, within Psest_2518at 2697.021 kb on - strand, within Psest_2518at 2697.033 kb on + strand, within Psest_2518at 2697.033 kb on + strand, within Psest_2518at 2697.033 kb on + strand, within Psest_2518at 2697.034 kb on - strand, within Psest_2518at 2697.034 kb on - strand, within Psest_2518at 2697.034 kb on - strand, within Psest_2518at 2697.163 kb on + strand, within Psest_2518at 2697.166 kb on + strand, within Psest_2518at 2697.166 kb on + strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.167 kb on - strand, within Psest_2518at 2697.170 kb on + strand, within Psest_2518at 2697.170 kb on + strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.171 kb on - strand, within Psest_2518at 2697.300 kb on + strand, within Psest_2518at 2697.301 kb on - strand, within Psest_2518at 2697.301 kb on - strand, within Psest_2518at 2697.783 kb on - strandat 2697.901 kb on + strand, within Psest_2520at 2698.566 kb on - strand, within Psest_2520

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,696,582 + +0.8
2,696,582 + -0.5
2,696,585 + -0.1
2,696,586 - +0.3
2,696,586 - +1.3
2,696,706 + Psest_2518 0.19 -0.0
2,696,707 - Psest_2518 0.19 -0.6
2,696,707 - Psest_2518 0.19 -0.3
2,696,942 - Psest_2518 0.47 +0.1
2,696,992 + Psest_2518 0.53 -0.7
2,696,993 - Psest_2518 0.53 +0.0
2,696,993 - Psest_2518 0.53 -0.3
2,697,020 + Psest_2518 0.56 -0.3
2,697,020 + Psest_2518 0.56 -0.5
2,697,020 + Psest_2518 0.56 -0.3
2,697,021 - Psest_2518 0.56 +0.0
2,697,021 - Psest_2518 0.56 +1.1
2,697,021 - Psest_2518 0.56 +0.9
2,697,033 + Psest_2518 0.57 -0.0
2,697,033 + Psest_2518 0.57 -0.1
2,697,033 + Psest_2518 0.57 +0.9
2,697,034 - Psest_2518 0.58 +0.4
2,697,034 - Psest_2518 0.58 +0.2
2,697,034 - Psest_2518 0.58 -0.0
2,697,163 + Psest_2518 0.73 -0.4
2,697,166 + Psest_2518 0.73 +0.7
2,697,166 + Psest_2518 0.73 -2.2
2,697,167 - Psest_2518 0.73 -0.0
2,697,167 - Psest_2518 0.73 -0.4
2,697,167 - Psest_2518 0.73 -1.4
2,697,167 - Psest_2518 0.73 +0.2
2,697,167 - Psest_2518 0.73 -0.1
2,697,167 - Psest_2518 0.73 +0.9
2,697,167 - Psest_2518 0.73 -0.3
2,697,167 - Psest_2518 0.73 +0.4
2,697,167 - Psest_2518 0.73 -0.2
2,697,170 + Psest_2518 0.74 -2.2
2,697,170 + Psest_2518 0.74 -0.2
2,697,171 - Psest_2518 0.74 -0.4
2,697,171 - Psest_2518 0.74 +0.0
2,697,171 - Psest_2518 0.74 -0.4
2,697,171 - Psest_2518 0.74 +0.5
2,697,171 - Psest_2518 0.74 +1.0
2,697,171 - Psest_2518 0.74 -0.3
2,697,171 - Psest_2518 0.74 -0.1
2,697,171 - Psest_2518 0.74 -0.3
2,697,171 - Psest_2518 0.74 +0.5
2,697,300 + Psest_2518 0.89 +0.3
2,697,301 - Psest_2518 0.89 -1.4
2,697,301 - Psest_2518 0.89 +0.4
2,697,783 - +1.6
2,697,901 + Psest_2520 0.15 -0.4
2,698,566 - Psest_2520 0.79 -0.2

Or see this region's nucleotide sequence