Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2376

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2373 and Psest_2374 overlap by 1 nucleotidesPsest_2374 and Psest_2375 overlap by 1 nucleotidesPsest_2375 and Psest_2376 overlap by 4 nucleotidesPsest_2376 and Psest_2377 overlap by 4 nucleotides Psest_2373: Psest_2373 - sulfur relay protein TusD/DsrE, at 2,525,516 to 2,525,908 _2373 Psest_2374: Psest_2374 - sulfur relay protein TusC/DsrF, at 2,525,908 to 2,526,267 _2374 Psest_2375: Psest_2375 - sulfur relay protein TusB/DsrH, at 2,526,267 to 2,526,569 _2375 Psest_2376: Psest_2376 - sulfur relay protein, TusE/DsrC/DsvC family, at 2,526,566 to 2,526,898 _2376 Psest_2377: Psest_2377 - Anthranilate phosphoribosyltransferase, at 2,526,895 to 2,527,878 _2377 Position (kb) 2526 2527Strain fitness (log2 ratio) -1 0 1 2at 2527.009 kb on - strand, within Psest_2377at 2527.169 kb on - strand, within Psest_2377at 2527.199 kb on - strand, within Psest_2377at 2527.199 kb on - strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.282 kb on + strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.283 kb on - strand, within Psest_2377at 2527.876 kb on + strandat 2527.876 kb on + strandat 2527.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,527,009 - Psest_2377 0.12 +0.6
2,527,169 - Psest_2377 0.28 -0.4
2,527,199 - Psest_2377 0.31 +2.0
2,527,199 - Psest_2377 0.31 +0.9
2,527,282 + Psest_2377 0.39 +0.3
2,527,282 + Psest_2377 0.39 -0.1
2,527,282 + Psest_2377 0.39 -0.2
2,527,282 + Psest_2377 0.39 +0.5
2,527,282 + Psest_2377 0.39 +0.7
2,527,282 + Psest_2377 0.39 -0.4
2,527,282 + Psest_2377 0.39 -0.4
2,527,283 - Psest_2377 0.39 -0.2
2,527,283 - Psest_2377 0.39 -0.7
2,527,283 - Psest_2377 0.39 +1.6
2,527,283 - Psest_2377 0.39 -1.1
2,527,283 - Psest_2377 0.39 +1.4
2,527,283 - Psest_2377 0.39 +0.0
2,527,283 - Psest_2377 0.39 -0.6
2,527,283 - Psest_2377 0.39 -1.3
2,527,283 - Psest_2377 0.39 -0.4
2,527,283 - Psest_2377 0.39 -0.4
2,527,876 + -0.0
2,527,876 + +1.0
2,527,877 - -0.8

Or see this region's nucleotide sequence