Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3362 and Psest_3363 are separated by 229 nucleotides Psest_3363 and Psest_3364 are separated by 108 nucleotides
Psest_3362: Psest_3362 - Uncharacterized protein conserved in bacteria, at 3,531,369 to 3,532,304
_3362
Psest_3363: Psest_3363 - hypothetical protein, at 3,532,534 to 3,532,827
_3363
Psest_3364: Psest_3364 - putative efflux protein, MATE family, at 3,532,936 to 3,534,309
_3364
Position (kb)
3532
3533 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3531.660 kb on - strand, within Psest_3362 at 3531.919 kb on + strand, within Psest_3362 at 3531.920 kb on - strand, within Psest_3362 at 3531.920 kb on - strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.104 kb on + strand, within Psest_3362 at 3532.105 kb on - strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.175 kb on - strand, within Psest_3362 at 3532.213 kb on + strand at 3532.214 kb on - strand at 3532.394 kb on + strand at 3532.405 kb on + strand at 3532.405 kb on + strand at 3532.405 kb on + strand at 3532.406 kb on - strand at 3532.406 kb on - strand at 3532.531 kb on + strand at 3532.531 kb on + strand at 3532.531 kb on + strand at 3532.532 kb on - strand at 3532.532 kb on - strand at 3532.532 kb on - strand at 3532.586 kb on + strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.906 kb on - strand at 3532.906 kb on - strand at 3532.906 kb on - strand at 3532.906 kb on - strand at 3532.907 kb on + strand at 3532.908 kb on - strand at 3532.908 kb on - strand at 3533.116 kb on + strand, within Psest_3364 at 3533.117 kb on - strand, within Psest_3364 at 3533.345 kb on - strand, within Psest_3364 at 3533.345 kb on - strand, within Psest_3364 at 3533.345 kb on - strand, within Psest_3364 at 3533.390 kb on - strand, within Psest_3364 at 3533.617 kb on - strand, within Psest_3364 at 3533.738 kb on + strand, within Psest_3364
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,531,660 - Psest_3362 0.31 -0.1 3,531,919 + Psest_3362 0.59 -0.3 3,531,920 - Psest_3362 0.59 -1.0 3,531,920 - Psest_3362 0.59 +0.2 3,531,923 + Psest_3362 0.59 +0.7 3,531,923 + Psest_3362 0.59 -0.4 3,531,923 + Psest_3362 0.59 +2.5 3,531,923 + Psest_3362 0.59 -0.6 3,531,923 + Psest_3362 0.59 +1.5 3,531,923 + Psest_3362 0.59 -0.6 3,531,923 + Psest_3362 0.59 +0.7 3,531,923 + Psest_3362 0.59 +0.2 3,531,924 - Psest_3362 0.59 +2.0 3,531,924 - Psest_3362 0.59 -0.8 3,531,924 - Psest_3362 0.59 -0.6 3,531,924 - Psest_3362 0.59 -2.0 3,531,924 - Psest_3362 0.59 -0.2 3,531,924 - Psest_3362 0.59 +0.6 3,531,924 - Psest_3362 0.59 -0.3 3,531,924 - Psest_3362 0.59 -0.3 3,531,924 - Psest_3362 0.59 -0.0 3,531,924 - Psest_3362 0.59 -0.9 3,531,924 - Psest_3362 0.59 -0.8 3,531,924 - Psest_3362 0.59 +0.1 3,532,048 + Psest_3362 0.73 +0.0 3,532,048 + Psest_3362 0.73 +0.4 3,532,048 + Psest_3362 0.73 -0.8 3,532,048 + Psest_3362 0.73 -0.2 3,532,048 + Psest_3362 0.73 +0.9 3,532,048 + Psest_3362 0.73 +1.1 3,532,049 - Psest_3362 0.73 +1.3 3,532,049 - Psest_3362 0.73 -0.4 3,532,049 - Psest_3362 0.73 +1.8 3,532,049 - Psest_3362 0.73 +0.3 3,532,049 - Psest_3362 0.73 -0.5 3,532,049 - Psest_3362 0.73 +0.2 3,532,104 + Psest_3362 0.79 -3.6 3,532,105 - Psest_3362 0.79 +0.1 3,532,174 + Psest_3362 0.86 +0.8 3,532,174 + Psest_3362 0.86 +0.5 3,532,174 + Psest_3362 0.86 -1.3 3,532,174 + Psest_3362 0.86 +0.4 3,532,174 + Psest_3362 0.86 -0.4 3,532,175 - Psest_3362 0.86 -1.0 3,532,213 + -2.9 3,532,214 - +0.8 3,532,394 + +1.7 3,532,405 + +0.3 3,532,405 + +0.4 3,532,405 + +0.0 3,532,406 - +1.0 3,532,406 - +1.1 3,532,531 + +1.2 3,532,531 + -0.9 3,532,531 + +0.7 3,532,532 - -1.8 3,532,532 - +0.6 3,532,532 - +0.2 3,532,586 + Psest_3363 0.18 +1.5 3,532,587 - Psest_3363 0.18 +1.4 3,532,587 - Psest_3363 0.18 -0.4 3,532,587 - Psest_3363 0.18 -1.1 3,532,587 - Psest_3363 0.18 +0.1 3,532,587 - Psest_3363 0.18 +0.1 3,532,587 - Psest_3363 0.18 +0.9 3,532,587 - Psest_3363 0.18 +0.1 3,532,587 - Psest_3363 0.18 +1.5 3,532,587 - Psest_3363 0.18 -0.8 3,532,587 - Psest_3363 0.18 +2.9 3,532,905 + -0.3 3,532,905 + +0.7 3,532,905 + +1.6 3,532,905 + +0.9 3,532,905 + +0.4 3,532,905 + -0.2 3,532,905 + +0.6 3,532,905 + -0.9 3,532,905 + -0.4 3,532,905 + -0.7 3,532,905 + -0.1 3,532,905 + -0.8 3,532,906 - +0.2 3,532,906 - -1.3 3,532,906 - -0.3 3,532,906 - -1.0 3,532,907 + -0.0 3,532,908 - +0.9 3,532,908 - -0.3 3,533,116 + Psest_3364 0.13 -0.1 3,533,117 - Psest_3364 0.13 -1.7 3,533,345 - Psest_3364 0.30 +0.8 3,533,345 - Psest_3364 0.30 +1.0 3,533,345 - Psest_3364 0.30 -0.1 3,533,390 - Psest_3364 0.33 +1.3 3,533,617 - Psest_3364 0.50 -0.8 3,533,738 + Psest_3364 0.58 +0.1
Or see this region's nucleotide sequence