Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3363

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3362 and Psest_3363 are separated by 229 nucleotidesPsest_3363 and Psest_3364 are separated by 108 nucleotides Psest_3362: Psest_3362 - Uncharacterized protein conserved in bacteria, at 3,531,369 to 3,532,304 _3362 Psest_3363: Psest_3363 - hypothetical protein, at 3,532,534 to 3,532,827 _3363 Psest_3364: Psest_3364 - putative efflux protein, MATE family, at 3,532,936 to 3,534,309 _3364 Position (kb) 3532 3533Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3531.660 kb on - strand, within Psest_3362at 3531.919 kb on + strand, within Psest_3362at 3531.920 kb on - strand, within Psest_3362at 3531.920 kb on - strand, within Psest_3362at 3531.923 kb on + strand, within Psest_3362at 3531.923 kb on + strand, within Psest_3362at 3531.923 kb on + strand, within Psest_3362at 3531.923 kb on + strand, within Psest_3362at 3531.923 kb on + strand, within Psest_3362at 3531.923 kb on + strand, within Psest_3362at 3531.923 kb on + strand, within Psest_3362at 3531.923 kb on + strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3531.924 kb on - strand, within Psest_3362at 3532.048 kb on + strand, within Psest_3362at 3532.048 kb on + strand, within Psest_3362at 3532.048 kb on + strand, within Psest_3362at 3532.048 kb on + strand, within Psest_3362at 3532.048 kb on + strand, within Psest_3362at 3532.048 kb on + strand, within Psest_3362at 3532.049 kb on - strand, within Psest_3362at 3532.049 kb on - strand, within Psest_3362at 3532.049 kb on - strand, within Psest_3362at 3532.049 kb on - strand, within Psest_3362at 3532.049 kb on - strand, within Psest_3362at 3532.049 kb on - strand, within Psest_3362at 3532.104 kb on + strand, within Psest_3362at 3532.105 kb on - strand, within Psest_3362at 3532.174 kb on + strand, within Psest_3362at 3532.174 kb on + strand, within Psest_3362at 3532.174 kb on + strand, within Psest_3362at 3532.174 kb on + strand, within Psest_3362at 3532.174 kb on + strand, within Psest_3362at 3532.175 kb on - strand, within Psest_3362at 3532.213 kb on + strandat 3532.214 kb on - strandat 3532.394 kb on + strandat 3532.405 kb on + strandat 3532.405 kb on + strandat 3532.405 kb on + strandat 3532.406 kb on - strandat 3532.406 kb on - strandat 3532.531 kb on + strandat 3532.531 kb on + strandat 3532.531 kb on + strandat 3532.532 kb on - strandat 3532.532 kb on - strandat 3532.532 kb on - strandat 3532.586 kb on + strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.587 kb on - strand, within Psest_3363at 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.905 kb on + strandat 3532.906 kb on - strandat 3532.906 kb on - strandat 3532.906 kb on - strandat 3532.906 kb on - strandat 3532.907 kb on + strandat 3532.908 kb on - strandat 3532.908 kb on - strandat 3533.116 kb on + strand, within Psest_3364at 3533.117 kb on - strand, within Psest_3364at 3533.345 kb on - strand, within Psest_3364at 3533.345 kb on - strand, within Psest_3364at 3533.345 kb on - strand, within Psest_3364at 3533.390 kb on - strand, within Psest_3364at 3533.617 kb on - strand, within Psest_3364at 3533.738 kb on + strand, within Psest_3364

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,531,660 - Psest_3362 0.31 -0.1
3,531,919 + Psest_3362 0.59 -0.3
3,531,920 - Psest_3362 0.59 -1.0
3,531,920 - Psest_3362 0.59 +0.2
3,531,923 + Psest_3362 0.59 +0.7
3,531,923 + Psest_3362 0.59 -0.4
3,531,923 + Psest_3362 0.59 +2.5
3,531,923 + Psest_3362 0.59 -0.6
3,531,923 + Psest_3362 0.59 +1.5
3,531,923 + Psest_3362 0.59 -0.6
3,531,923 + Psest_3362 0.59 +0.7
3,531,923 + Psest_3362 0.59 +0.2
3,531,924 - Psest_3362 0.59 +2.0
3,531,924 - Psest_3362 0.59 -0.8
3,531,924 - Psest_3362 0.59 -0.6
3,531,924 - Psest_3362 0.59 -2.0
3,531,924 - Psest_3362 0.59 -0.2
3,531,924 - Psest_3362 0.59 +0.6
3,531,924 - Psest_3362 0.59 -0.3
3,531,924 - Psest_3362 0.59 -0.3
3,531,924 - Psest_3362 0.59 -0.0
3,531,924 - Psest_3362 0.59 -0.9
3,531,924 - Psest_3362 0.59 -0.8
3,531,924 - Psest_3362 0.59 +0.1
3,532,048 + Psest_3362 0.73 +0.0
3,532,048 + Psest_3362 0.73 +0.4
3,532,048 + Psest_3362 0.73 -0.8
3,532,048 + Psest_3362 0.73 -0.2
3,532,048 + Psest_3362 0.73 +0.9
3,532,048 + Psest_3362 0.73 +1.1
3,532,049 - Psest_3362 0.73 +1.3
3,532,049 - Psest_3362 0.73 -0.4
3,532,049 - Psest_3362 0.73 +1.8
3,532,049 - Psest_3362 0.73 +0.3
3,532,049 - Psest_3362 0.73 -0.5
3,532,049 - Psest_3362 0.73 +0.2
3,532,104 + Psest_3362 0.79 -3.6
3,532,105 - Psest_3362 0.79 +0.1
3,532,174 + Psest_3362 0.86 +0.8
3,532,174 + Psest_3362 0.86 +0.5
3,532,174 + Psest_3362 0.86 -1.3
3,532,174 + Psest_3362 0.86 +0.4
3,532,174 + Psest_3362 0.86 -0.4
3,532,175 - Psest_3362 0.86 -1.0
3,532,213 + -2.9
3,532,214 - +0.8
3,532,394 + +1.7
3,532,405 + +0.3
3,532,405 + +0.4
3,532,405 + +0.0
3,532,406 - +1.0
3,532,406 - +1.1
3,532,531 + +1.2
3,532,531 + -0.9
3,532,531 + +0.7
3,532,532 - -1.8
3,532,532 - +0.6
3,532,532 - +0.2
3,532,586 + Psest_3363 0.18 +1.5
3,532,587 - Psest_3363 0.18 +1.4
3,532,587 - Psest_3363 0.18 -0.4
3,532,587 - Psest_3363 0.18 -1.1
3,532,587 - Psest_3363 0.18 +0.1
3,532,587 - Psest_3363 0.18 +0.1
3,532,587 - Psest_3363 0.18 +0.9
3,532,587 - Psest_3363 0.18 +0.1
3,532,587 - Psest_3363 0.18 +1.5
3,532,587 - Psest_3363 0.18 -0.8
3,532,587 - Psest_3363 0.18 +2.9
3,532,905 + -0.3
3,532,905 + +0.7
3,532,905 + +1.6
3,532,905 + +0.9
3,532,905 + +0.4
3,532,905 + -0.2
3,532,905 + +0.6
3,532,905 + -0.9
3,532,905 + -0.4
3,532,905 + -0.7
3,532,905 + -0.1
3,532,905 + -0.8
3,532,906 - +0.2
3,532,906 - -1.3
3,532,906 - -0.3
3,532,906 - -1.0
3,532,907 + -0.0
3,532,908 - +0.9
3,532,908 - -0.3
3,533,116 + Psest_3364 0.13 -0.1
3,533,117 - Psest_3364 0.13 -1.7
3,533,345 - Psest_3364 0.30 +0.8
3,533,345 - Psest_3364 0.30 +1.0
3,533,345 - Psest_3364 0.30 -0.1
3,533,390 - Psest_3364 0.33 +1.3
3,533,617 - Psest_3364 0.50 -0.8
3,533,738 + Psest_3364 0.58 +0.1

Or see this region's nucleotide sequence