Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1912

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1911 and Psest_1912 are separated by 327 nucleotidesPsest_1912 and Psest_1913 are separated by 6 nucleotides Psest_1911: Psest_1911 - spermidine synthase, at 2,018,835 to 2,019,695 _1911 Psest_1912: Psest_1912 - Protein of unknown function (DUF1260)., at 2,020,023 to 2,020,364 _1912 Psest_1913: Psest_1913 - Transcriptional regulator, at 2,020,371 to 2,021,327 _1913 Position (kb) 2020 2021Strain fitness (log2 ratio) -2 -1 0 1 2at 2019.348 kb on + strand, within Psest_1911at 2019.480 kb on + strand, within Psest_1911at 2019.481 kb on - strand, within Psest_1911at 2019.481 kb on - strand, within Psest_1911at 2019.481 kb on - strand, within Psest_1911at 2019.497 kb on + strand, within Psest_1911at 2019.497 kb on + strand, within Psest_1911at 2019.497 kb on + strand, within Psest_1911at 2019.498 kb on - strand, within Psest_1911at 2019.498 kb on - strand, within Psest_1911at 2019.498 kb on - strand, within Psest_1911at 2019.501 kb on + strand, within Psest_1911at 2019.501 kb on + strand, within Psest_1911at 2019.501 kb on + strand, within Psest_1911at 2019.501 kb on + strand, within Psest_1911at 2019.501 kb on + strand, within Psest_1911at 2019.501 kb on + strand, within Psest_1911at 2019.502 kb on - strand, within Psest_1911at 2019.502 kb on - strand, within Psest_1911at 2019.502 kb on - strand, within Psest_1911at 2019.612 kb on + strandat 2019.613 kb on - strandat 2019.615 kb on + strandat 2019.615 kb on + strandat 2019.615 kb on + strandat 2019.615 kb on + strandat 2019.616 kb on - strandat 2019.616 kb on - strandat 2019.658 kb on - strandat 2019.658 kb on - strandat 2019.658 kb on - strandat 2019.658 kb on - strandat 2019.658 kb on - strandat 2019.883 kb on + strandat 2019.884 kb on - strandat 2019.884 kb on - strandat 2019.884 kb on - strandat 2019.924 kb on + strandat 2020.005 kb on - strandat 2020.005 kb on - strandat 2020.005 kb on - strandat 2020.119 kb on + strand, within Psest_1912at 2020.120 kb on - strand, within Psest_1912at 2020.187 kb on + strand, within Psest_1912at 2020.231 kb on + strand, within Psest_1912at 2020.245 kb on + strand, within Psest_1912at 2020.245 kb on + strand, within Psest_1912at 2020.245 kb on + strand, within Psest_1912at 2020.245 kb on + strand, within Psest_1912at 2020.246 kb on - strand, within Psest_1912at 2020.246 kb on - strand, within Psest_1912at 2020.246 kb on - strand, within Psest_1912at 2020.246 kb on - strand, within Psest_1912at 2020.246 kb on - strand, within Psest_1912at 2020.246 kb on - strand, within Psest_1912at 2020.246 kb on - strand, within Psest_1912at 2020.496 kb on - strand, within Psest_1913at 2020.798 kb on + strand, within Psest_1913at 2020.893 kb on + strand, within Psest_1913at 2020.893 kb on + strand, within Psest_1913at 2020.893 kb on + strand, within Psest_1913at 2020.894 kb on - strand, within Psest_1913at 2021.210 kb on + strand, within Psest_1913at 2021.280 kb on + strandat 2021.280 kb on + strandat 2021.280 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,019,348 + Psest_1911 0.60 -0.0
2,019,480 + Psest_1911 0.75 +0.6
2,019,481 - Psest_1911 0.75 +1.1
2,019,481 - Psest_1911 0.75 +0.1
2,019,481 - Psest_1911 0.75 +0.2
2,019,497 + Psest_1911 0.77 +0.5
2,019,497 + Psest_1911 0.77 +0.5
2,019,497 + Psest_1911 0.77 +0.2
2,019,498 - Psest_1911 0.77 -0.4
2,019,498 - Psest_1911 0.77 +1.1
2,019,498 - Psest_1911 0.77 -1.5
2,019,501 + Psest_1911 0.77 -1.7
2,019,501 + Psest_1911 0.77 -0.4
2,019,501 + Psest_1911 0.77 +0.1
2,019,501 + Psest_1911 0.77 +0.6
2,019,501 + Psest_1911 0.77 -0.6
2,019,501 + Psest_1911 0.77 -0.2
2,019,502 - Psest_1911 0.77 +0.4
2,019,502 - Psest_1911 0.77 +0.4
2,019,502 - Psest_1911 0.77 +0.2
2,019,612 + -0.5
2,019,613 - +1.5
2,019,615 + -1.4
2,019,615 + -0.6
2,019,615 + +2.0
2,019,615 + +0.8
2,019,616 - -0.5
2,019,616 - -2.1
2,019,658 - -0.9
2,019,658 - +0.6
2,019,658 - -1.1
2,019,658 - -0.8
2,019,658 - -0.1
2,019,883 + -0.4
2,019,884 - -0.6
2,019,884 - +1.7
2,019,884 - +0.4
2,019,924 + -0.8
2,020,005 - +0.1
2,020,005 - +1.7
2,020,005 - +0.4
2,020,119 + Psest_1912 0.28 -0.5
2,020,120 - Psest_1912 0.28 -1.3
2,020,187 + Psest_1912 0.48 +1.3
2,020,231 + Psest_1912 0.61 +1.2
2,020,245 + Psest_1912 0.65 +0.5
2,020,245 + Psest_1912 0.65 -0.4
2,020,245 + Psest_1912 0.65 -0.6
2,020,245 + Psest_1912 0.65 +1.2
2,020,246 - Psest_1912 0.65 +0.8
2,020,246 - Psest_1912 0.65 +0.7
2,020,246 - Psest_1912 0.65 +0.2
2,020,246 - Psest_1912 0.65 +1.3
2,020,246 - Psest_1912 0.65 -0.0
2,020,246 - Psest_1912 0.65 -0.4
2,020,246 - Psest_1912 0.65 +1.6
2,020,496 - Psest_1913 0.13 +0.5
2,020,798 + Psest_1913 0.45 -0.4
2,020,893 + Psest_1913 0.55 -0.7
2,020,893 + Psest_1913 0.55 +1.0
2,020,893 + Psest_1913 0.55 +0.1
2,020,894 - Psest_1913 0.55 -1.1
2,021,210 + Psest_1913 0.88 +1.8
2,021,280 + +0.3
2,021,280 + +0.4
2,021,280 + +0.3

Or see this region's nucleotide sequence