Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1794

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1793 and Psest_1794 are separated by 14 nucleotidesPsest_1794 and Psest_1795 are separated by 2 nucleotidesPsest_1795 and Psest_1796 are separated by 112 nucleotides Psest_1793: Psest_1793 - Predicted divalent heavy-metal cations transporter, at 1,888,575 to 1,889,507 _1793 Psest_1794: Psest_1794 - Flagellar motor protein, at 1,889,522 to 1,890,262 _1794 Psest_1795: Psest_1795 - Flagellar motor component, at 1,890,265 to 1,891,074 _1795 Psest_1796: Psest_1796 - Predicted NAD/FAD-dependent oxidoreductase, at 1,891,187 to 1,892,173 _1796 Position (kb) 1889 1890 1891Strain fitness (log2 ratio) -2 -1 0 1 2at 1888.542 kb on - strandat 1888.707 kb on - strand, within Psest_1793at 1889.011 kb on - strand, within Psest_1793at 1889.566 kb on + strandat 1889.566 kb on + strandat 1889.670 kb on + strand, within Psest_1794at 1889.876 kb on - strand, within Psest_1794at 1889.887 kb on + strand, within Psest_1794at 1889.887 kb on + strand, within Psest_1794at 1890.029 kb on - strand, within Psest_1794at 1890.171 kb on + strand, within Psest_1794at 1890.171 kb on + strand, within Psest_1794at 1890.172 kb on - strand, within Psest_1794at 1890.362 kb on + strand, within Psest_1795at 1890.362 kb on + strand, within Psest_1795at 1890.362 kb on + strand, within Psest_1795at 1890.362 kb on + strand, within Psest_1795at 1890.362 kb on + strand, within Psest_1795at 1890.363 kb on - strand, within Psest_1795at 1890.363 kb on - strand, within Psest_1795at 1890.363 kb on - strand, within Psest_1795at 1890.406 kb on + strand, within Psest_1795at 1890.620 kb on + strand, within Psest_1795at 1890.621 kb on - strand, within Psest_1795at 1890.621 kb on - strand, within Psest_1795at 1890.621 kb on - strand, within Psest_1795at 1890.825 kb on + strand, within Psest_1795at 1890.825 kb on + strand, within Psest_1795at 1890.825 kb on + strand, within Psest_1795at 1890.826 kb on - strand, within Psest_1795at 1890.826 kb on - strand, within Psest_1795at 1890.826 kb on - strand, within Psest_1795at 1890.826 kb on - strand, within Psest_1795at 1890.826 kb on - strand, within Psest_1795at 1890.826 kb on - strand, within Psest_1795at 1890.826 kb on - strand, within Psest_1795at 1890.826 kb on - strand, within Psest_1795at 1890.857 kb on + strand, within Psest_1795at 1890.857 kb on + strand, within Psest_1795at 1890.857 kb on + strand, within Psest_1795at 1890.858 kb on - strand, within Psest_1795at 1890.858 kb on - strand, within Psest_1795

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,888,542 - -1.6
1,888,707 - Psest_1793 0.14 +1.0
1,889,011 - Psest_1793 0.47 +0.7
1,889,566 + +0.0
1,889,566 + -1.6
1,889,670 + Psest_1794 0.20 +1.3
1,889,876 - Psest_1794 0.48 +1.2
1,889,887 + Psest_1794 0.49 +1.2
1,889,887 + Psest_1794 0.49 -0.2
1,890,029 - Psest_1794 0.68 -0.3
1,890,171 + Psest_1794 0.88 -0.1
1,890,171 + Psest_1794 0.88 +0.5
1,890,172 - Psest_1794 0.88 +1.1
1,890,362 + Psest_1795 0.12 +0.1
1,890,362 + Psest_1795 0.12 +0.3
1,890,362 + Psest_1795 0.12 -1.8
1,890,362 + Psest_1795 0.12 +0.4
1,890,362 + Psest_1795 0.12 +0.3
1,890,363 - Psest_1795 0.12 -1.1
1,890,363 - Psest_1795 0.12 +0.0
1,890,363 - Psest_1795 0.12 -1.2
1,890,406 + Psest_1795 0.17 -2.3
1,890,620 + Psest_1795 0.44 -0.1
1,890,621 - Psest_1795 0.44 +2.1
1,890,621 - Psest_1795 0.44 +0.6
1,890,621 - Psest_1795 0.44 +0.1
1,890,825 + Psest_1795 0.69 +0.3
1,890,825 + Psest_1795 0.69 +0.5
1,890,825 + Psest_1795 0.69 +0.6
1,890,826 - Psest_1795 0.69 +0.2
1,890,826 - Psest_1795 0.69 +0.0
1,890,826 - Psest_1795 0.69 -1.0
1,890,826 - Psest_1795 0.69 +0.4
1,890,826 - Psest_1795 0.69 -0.5
1,890,826 - Psest_1795 0.69 +0.6
1,890,826 - Psest_1795 0.69 +0.2
1,890,826 - Psest_1795 0.69 +0.3
1,890,857 + Psest_1795 0.73 +0.1
1,890,857 + Psest_1795 0.73 +0.2
1,890,857 + Psest_1795 0.73 -0.1
1,890,858 - Psest_1795 0.73 -1.4
1,890,858 - Psest_1795 0.73 -0.3

Or see this region's nucleotide sequence