Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0892

Experiment: Doxycycline hyclate 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0890 and Psest_0891 are separated by 59 nucleotidesPsest_0891 and Psest_0892 are separated by 60 nucleotidesPsest_0892 and Psest_0893 are separated by 108 nucleotides Psest_0890: Psest_0890 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 966,921 to 968,030 _0890 Psest_0891: Psest_0891 - Uncharacterized protein conserved in bacteria, at 968,090 to 968,314 _0891 Psest_0892: Psest_0892 - Short-chain alcohol dehydrogenase of unknown specificity, at 968,375 to 969,154 _0892 Psest_0893: Psest_0893 - Transcriptional regulator, at 969,263 to 970,177 _0893 Position (kb) 968 969 970Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 967.600 kb on + strand, within Psest_0890at 967.601 kb on - strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.633 kb on + strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.652 kb on - strand, within Psest_0890at 967.768 kb on + strand, within Psest_0890at 967.769 kb on - strand, within Psest_0890at 968.045 kb on + strandat 968.045 kb on + strandat 968.046 kb on - strandat 968.048 kb on + strandat 968.048 kb on + strandat 968.048 kb on + strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.052 kb on + strandat 968.053 kb on - strandat 968.053 kb on - strandat 968.053 kb on - strandat 968.057 kb on - strandat 968.057 kb on - strandat 968.092 kb on - strandat 968.101 kb on - strandat 968.101 kb on - strandat 968.101 kb on - strandat 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.335 kb on + strandat 968.377 kb on - strandat 968.413 kb on + strandat 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.620 kb on + strand, within Psest_0892at 968.621 kb on - strand, within Psest_0892at 968.649 kb on + strand, within Psest_0892at 968.758 kb on - strand, within Psest_0892at 968.780 kb on - strand, within Psest_0892at 968.858 kb on + strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.874 kb on + strand, within Psest_0892at 968.874 kb on + strand, within Psest_0892at 968.875 kb on - strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.992 kb on + strand, within Psest_0892at 968.993 kb on - strand, within Psest_0892at 969.018 kb on - strand, within Psest_0892at 969.145 kb on - strandat 969.184 kb on + strandat 969.185 kb on - strandat 969.185 kb on - strandat 969.185 kb on - strandat 969.206 kb on - strandat 969.230 kb on - strandat 969.269 kb on - strandat 969.287 kb on - strandat 969.316 kb on + strandat 969.316 kb on + strandat 969.316 kb on + strandat 969.317 kb on - strandat 969.317 kb on - strandat 969.458 kb on + strand, within Psest_0893at 969.538 kb on + strand, within Psest_0893at 969.539 kb on - strand, within Psest_0893at 969.582 kb on + strand, within Psest_0893at 969.683 kb on - strand, within Psest_0893at 969.719 kb on + strand, within Psest_0893at 969.719 kb on + strand, within Psest_0893at 969.735 kb on + strand, within Psest_0893at 969.736 kb on - strand, within Psest_0893at 969.753 kb on - strand, within Psest_0893at 969.753 kb on - strand, within Psest_0893at 969.796 kb on + strand, within Psest_0893at 969.796 kb on + strand, within Psest_0893at 969.796 kb on + strand, within Psest_0893at 969.797 kb on - strand, within Psest_0893at 969.797 kb on - strand, within Psest_0893at 969.813 kb on + strand, within Psest_0893at 969.817 kb on + strand, within Psest_0893at 969.817 kb on + strand, within Psest_0893at 969.817 kb on + strand, within Psest_0893at 969.817 kb on + strand, within Psest_0893at 969.817 kb on + strand, within Psest_0893at 969.817 kb on + strand, within Psest_0893at 969.817 kb on + strand, within Psest_0893at 969.817 kb on + strand, within Psest_0893at 969.818 kb on - strand, within Psest_0893at 969.818 kb on - strand, within Psest_0893at 969.873 kb on + strand, within Psest_0893at 969.874 kb on - strand, within Psest_0893at 969.874 kb on - strand, within Psest_0893at 969.916 kb on + strand, within Psest_0893at 969.916 kb on + strand, within Psest_0893at 969.916 kb on + strand, within Psest_0893at 970.068 kb on + strand, within Psest_0893at 970.068 kb on + strand, within Psest_0893at 970.068 kb on + strand, within Psest_0893at 970.068 kb on + strand, within Psest_0893at 970.068 kb on + strand, within Psest_0893at 970.068 kb on + strand, within Psest_0893at 970.069 kb on - strand, within Psest_0893at 970.069 kb on - strand, within Psest_0893at 970.069 kb on - strand, within Psest_0893at 970.070 kb on + strand, within Psest_0893at 970.070 kb on + strand, within Psest_0893at 970.070 kb on + strand, within Psest_0893at 970.070 kb on + strand, within Psest_0893at 970.070 kb on + strand, within Psest_0893at 970.070 kb on + strand, within Psest_0893at 970.070 kb on + strand, within Psest_0893at 970.070 kb on + strand, within Psest_0893at 970.071 kb on - strand, within Psest_0893at 970.071 kb on - strand, within Psest_0893at 970.071 kb on - strand, within Psest_0893at 970.116 kb on - strandat 970.116 kb on - strandat 970.126 kb on + strandat 970.127 kb on - strandat 970.127 kb on - strandat 970.127 kb on - strandat 970.152 kb on + strandat 970.152 kb on + strandat 970.152 kb on + strandat 970.153 kb on - strandat 970.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml
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967,600 + Psest_0890 0.61 -0.5
967,601 - Psest_0890 0.61 -0.8
967,627 + Psest_0890 0.64 +1.5
967,627 + Psest_0890 0.64 -0.8
967,627 + Psest_0890 0.64 +1.0
967,627 + Psest_0890 0.64 +0.1
967,628 - Psest_0890 0.64 -1.3
967,628 - Psest_0890 0.64 -2.4
967,628 - Psest_0890 0.64 -0.3
967,628 - Psest_0890 0.64 -1.9
967,628 - Psest_0890 0.64 -0.2
967,633 + Psest_0890 0.64 -0.1
967,634 - Psest_0890 0.64 +0.0
967,634 - Psest_0890 0.64 -1.4
967,634 - Psest_0890 0.64 -0.2
967,634 - Psest_0890 0.64 +0.1
967,651 + Psest_0890 0.66 +1.0
967,651 + Psest_0890 0.66 +1.4
967,651 + Psest_0890 0.66 +0.1
967,651 + Psest_0890 0.66 +1.2
967,651 + Psest_0890 0.66 -1.9
967,652 - Psest_0890 0.66 +1.9
967,768 + Psest_0890 0.76 -1.5
967,769 - Psest_0890 0.76 +0.5
968,045 + +0.2
968,045 + +0.1
968,046 - +2.1
968,048 + -1.8
968,048 + +1.0
968,048 + -1.3
968,049 - +1.6
968,049 - +1.0
968,049 - -1.6
968,049 - +0.5
968,049 - -0.9
968,049 - +0.1
968,049 - -1.4
968,052 + +0.6
968,053 - +2.0
968,053 - -0.9
968,053 - -1.2
968,057 - +0.2
968,057 - -0.5
968,092 - +0.4
968,101 - +0.1
968,101 - +0.7
968,101 - +2.1
968,187 + Psest_0891 0.43 -0.3
968,187 + Psest_0891 0.43 +2.7
968,187 + Psest_0891 0.43 +2.7
968,187 + Psest_0891 0.43 -1.3
968,187 + Psest_0891 0.43 -0.3
968,187 + Psest_0891 0.43 -0.6
968,188 - Psest_0891 0.44 -1.4
968,188 - Psest_0891 0.44 +0.6
968,188 - Psest_0891 0.44 -0.7
968,188 - Psest_0891 0.44 -2.8
968,188 - Psest_0891 0.44 -0.2
968,188 - Psest_0891 0.44 -1.4
968,188 - Psest_0891 0.44 +0.1
968,188 - Psest_0891 0.44 +2.6
968,188 - Psest_0891 0.44 +0.8
968,335 + -0.5
968,377 - +0.3
968,413 + -2.4
968,490 + Psest_0892 0.15 +0.1
968,490 + Psest_0892 0.15 -0.6
968,490 + Psest_0892 0.15 -0.5
968,490 + Psest_0892 0.15 -1.0
968,490 + Psest_0892 0.15 -0.5
968,491 - Psest_0892 0.15 +2.0
968,491 - Psest_0892 0.15 +0.6
968,491 - Psest_0892 0.15 -0.3
968,491 - Psest_0892 0.15 -1.0
968,491 - Psest_0892 0.15 -0.5
968,491 - Psest_0892 0.15 +1.3
968,620 + Psest_0892 0.31 -2.5
968,621 - Psest_0892 0.32 -2.5
968,649 + Psest_0892 0.35 +1.4
968,758 - Psest_0892 0.49 -2.0
968,780 - Psest_0892 0.52 +1.6
968,858 + Psest_0892 0.62 -3.9
968,859 - Psest_0892 0.62 -0.4
968,859 - Psest_0892 0.62 -0.7
968,859 - Psest_0892 0.62 -0.5
968,859 - Psest_0892 0.62 -0.3
968,859 - Psest_0892 0.62 -0.3
968,859 - Psest_0892 0.62 +1.5
968,859 - Psest_0892 0.62 -1.5
968,859 - Psest_0892 0.62 -0.1
968,859 - Psest_0892 0.62 +0.8
968,859 - Psest_0892 0.62 -1.8
968,874 + Psest_0892 0.64 -1.3
968,874 + Psest_0892 0.64 -1.6
968,875 - Psest_0892 0.64 +1.1
968,923 + Psest_0892 0.70 -1.6
968,923 + Psest_0892 0.70 +0.9
968,923 + Psest_0892 0.70 -0.9
968,924 - Psest_0892 0.70 +0.3
968,924 - Psest_0892 0.70 +1.4
968,924 - Psest_0892 0.70 -2.3
968,992 + Psest_0892 0.79 -1.6
968,993 - Psest_0892 0.79 +0.5
969,018 - Psest_0892 0.82 -2.6
969,145 - +2.7
969,184 + +0.0
969,185 - -1.9
969,185 - +1.2
969,185 - -2.2
969,206 - -1.2
969,230 - -1.6
969,269 - +3.8
969,287 - -1.0
969,316 + +2.1
969,316 + -0.0
969,316 + -0.8
969,317 - +0.9
969,317 - -2.7
969,458 + Psest_0893 0.21 +2.6
969,538 + Psest_0893 0.30 -0.1
969,539 - Psest_0893 0.30 -1.6
969,582 + Psest_0893 0.35 -0.2
969,683 - Psest_0893 0.46 +0.3
969,719 + Psest_0893 0.50 +1.2
969,719 + Psest_0893 0.50 +0.3
969,735 + Psest_0893 0.52 -1.0
969,736 - Psest_0893 0.52 +0.9
969,753 - Psest_0893 0.54 +0.4
969,753 - Psest_0893 0.54 +2.0
969,796 + Psest_0893 0.58 +0.7
969,796 + Psest_0893 0.58 -1.6
969,796 + Psest_0893 0.58 +0.4
969,797 - Psest_0893 0.58 -0.9
969,797 - Psest_0893 0.58 -0.9
969,813 + Psest_0893 0.60 -2.9
969,817 + Psest_0893 0.61 -0.3
969,817 + Psest_0893 0.61 -1.1
969,817 + Psest_0893 0.61 -3.0
969,817 + Psest_0893 0.61 -1.4
969,817 + Psest_0893 0.61 -1.0
969,817 + Psest_0893 0.61 -1.5
969,817 + Psest_0893 0.61 -0.2
969,817 + Psest_0893 0.61 -0.7
969,818 - Psest_0893 0.61 +2.1
969,818 - Psest_0893 0.61 +1.8
969,873 + Psest_0893 0.67 +2.1
969,874 - Psest_0893 0.67 +0.3
969,874 - Psest_0893 0.67 -0.4
969,916 + Psest_0893 0.71 -1.1
969,916 + Psest_0893 0.71 -1.8
969,916 + Psest_0893 0.71 +1.2
970,068 + Psest_0893 0.88 +0.3
970,068 + Psest_0893 0.88 -1.2
970,068 + Psest_0893 0.88 +0.4
970,068 + Psest_0893 0.88 -0.3
970,068 + Psest_0893 0.88 +1.3
970,068 + Psest_0893 0.88 -0.8
970,069 - Psest_0893 0.88 +2.2
970,069 - Psest_0893 0.88 -0.1
970,069 - Psest_0893 0.88 -0.0
970,070 + Psest_0893 0.88 +1.9
970,070 + Psest_0893 0.88 +3.8
970,070 + Psest_0893 0.88 +3.0
970,070 + Psest_0893 0.88 +2.7
970,070 + Psest_0893 0.88 -2.5
970,070 + Psest_0893 0.88 -0.6
970,070 + Psest_0893 0.88 -0.8
970,070 + Psest_0893 0.88 +1.9
970,071 - Psest_0893 0.88 +2.7
970,071 - Psest_0893 0.88 -2.6
970,071 - Psest_0893 0.88 -2.6
970,116 - -1.5
970,116 - -0.4
970,126 + +0.6
970,127 - -0.8
970,127 - -0.1
970,127 - +2.0
970,152 + -0.3
970,152 + +0.7
970,152 + -1.8
970,153 - +1.2
970,153 - +0.8

Or see this region's nucleotide sequence