Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0787 and Psest_0788 overlap by 17 nucleotides Psest_0788 and Psest_0789 are separated by 216 nucleotides Psest_0789 and Psest_0790 are separated by 68 nucleotides
Psest_0787: Psest_0787 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 860,763 to 861,761
_0787
Psest_0788: Psest_0788 - Uncharacterized conserved protein, at 861,745 to 862,164
_0788
Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734
_0789
Psest_0790: Psest_0790 - Uncharacterized protein conserved in bacteria, at 862,803 to 863,243
_0790
Position (kb) 861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.802 kb on + strand at 860.958 kb on + strand, within Psest_0787 at 861.057 kb on + strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.180 kb on + strand, within Psest_0787 at 861.352 kb on - strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.471 kb on + strand, within Psest_0787 at 861.471 kb on + strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.645 kb on - strand, within Psest_0787 at 861.645 kb on - strand, within Psest_0787 at 861.699 kb on + strand at 861.699 kb on + strand at 861.699 kb on + strand at 861.700 kb on - strand at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.885 kb on - strand, within Psest_0788 at 861.885 kb on - strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 862.142 kb on + strand at 862.153 kb on - strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.220 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.230 kb on - strand at 862.230 kb on - strand at 862.247 kb on - strand at 862.248 kb on + strand at 862.249 kb on - strand at 862.337 kb on - strand at 862.431 kb on + strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.619 kb on - strand, within Psest_0789 at 862.625 kb on + strand, within Psest_0789 at 862.626 kb on - strand, within Psest_0789 at 862.810 kb on - strand at 862.989 kb on + strand, within Psest_0790 at 863.083 kb on + strand, within Psest_0790 at 863.083 kb on + strand, within Psest_0790 at 863.084 kb on - strand, within Psest_0790
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 860,766 + -2.0 860,766 + -1.9 860,766 + +0.2 860,766 + -1.1 860,766 + -0.9 860,766 + +0.4 860,767 - +1.2 860,767 - +1.1 860,767 - +0.5 860,767 - -0.2 860,767 - -1.5 860,767 - -0.4 860,767 - -0.6 860,767 - +1.3 860,767 - -1.2 860,767 - -1.9 860,802 + -0.3 860,958 + Psest_0787 0.20 +1.1 861,057 + Psest_0787 0.29 -0.4 861,058 - Psest_0787 0.30 -0.8 861,058 - Psest_0787 0.30 -1.2 861,058 - Psest_0787 0.30 +2.7 861,058 - Psest_0787 0.30 +1.7 861,180 + Psest_0787 0.42 +0.7 861,352 - Psest_0787 0.59 +0.1 861,438 + Psest_0787 0.68 -1.1 861,438 + Psest_0787 0.68 +1.0 861,438 + Psest_0787 0.68 -1.0 861,439 - Psest_0787 0.68 +1.0 861,439 - Psest_0787 0.68 +0.4 861,439 - Psest_0787 0.68 +1.8 861,439 - Psest_0787 0.68 -0.4 861,439 - Psest_0787 0.68 +1.0 861,439 - Psest_0787 0.68 -0.4 861,439 - Psest_0787 0.68 -1.2 861,471 + Psest_0787 0.71 +0.7 861,471 + Psest_0787 0.71 +2.2 861,472 - Psest_0787 0.71 +0.5 861,472 - Psest_0787 0.71 +0.3 861,472 - Psest_0787 0.71 +1.3 861,472 - Psest_0787 0.71 -0.8 861,472 - Psest_0787 0.71 +1.7 861,472 - Psest_0787 0.71 +0.5 861,472 - Psest_0787 0.71 +1.4 861,472 - Psest_0787 0.71 +1.4 861,472 - Psest_0787 0.71 +0.2 861,644 + Psest_0787 0.88 +0.1 861,644 + Psest_0787 0.88 +1.6 861,644 + Psest_0787 0.88 +0.7 861,644 + Psest_0787 0.88 +1.3 861,645 - Psest_0787 0.88 -0.7 861,645 - Psest_0787 0.88 +0.4 861,699 + +3.1 861,699 + +0.7 861,699 + +1.2 861,700 - -0.8 861,788 + Psest_0788 0.10 -1.3 861,788 + Psest_0788 0.10 -0.7 861,788 + Psest_0788 0.10 -1.2 861,788 + Psest_0788 0.10 +0.2 861,789 - Psest_0788 0.10 -0.9 861,789 - Psest_0788 0.10 -1.0 861,789 - Psest_0788 0.10 -1.0 861,789 - Psest_0788 0.10 +1.5 861,884 + Psest_0788 0.33 +2.3 861,884 + Psest_0788 0.33 -0.4 861,884 + Psest_0788 0.33 +3.5 861,884 + Psest_0788 0.33 +2.3 861,885 - Psest_0788 0.33 -0.4 861,885 - Psest_0788 0.33 +0.4 861,886 + Psest_0788 0.34 -2.0 861,886 + Psest_0788 0.34 -0.7 861,886 + Psest_0788 0.34 +1.6 861,886 + Psest_0788 0.34 +0.3 861,886 + Psest_0788 0.34 -0.2 861,886 + Psest_0788 0.34 -1.2 861,886 + Psest_0788 0.34 -0.2 861,886 + Psest_0788 0.34 +1.9 861,886 + Psest_0788 0.34 -0.6 861,886 + Psest_0788 0.34 +2.3 861,887 - Psest_0788 0.34 -1.6 861,887 - Psest_0788 0.34 +0.4 861,887 - Psest_0788 0.34 +0.2 861,887 - Psest_0788 0.34 -1.0 861,887 - Psest_0788 0.34 -2.5 861,887 - Psest_0788 0.34 +0.4 861,887 - Psest_0788 0.34 +0.7 861,887 - Psest_0788 0.34 +1.2 861,887 - Psest_0788 0.34 -1.2 861,887 - Psest_0788 0.34 +1.2 861,887 - Psest_0788 0.34 +0.0 861,887 - Psest_0788 0.34 +0.7 861,887 - Psest_0788 0.34 +0.1 862,142 + +1.0 862,153 - +1.2 862,198 + -1.8 862,198 + +1.2 862,198 + -0.1 862,198 + -0.1 862,198 + -1.2 862,198 + -0.5 862,198 + +0.1 862,198 + -1.5 862,199 - -0.1 862,199 - -0.8 862,199 - -2.5 862,199 - -3.0 862,199 - -0.0 862,199 - -0.9 862,199 - +0.9 862,199 - -0.5 862,199 - -0.9 862,199 - -0.4 862,199 - -0.2 862,220 + -0.8 862,227 + -0.9 862,227 + +1.7 862,227 + -1.2 862,227 + -2.0 862,227 + +1.8 862,227 + +2.0 862,227 + +0.0 862,227 + -1.2 862,227 + -0.3 862,227 + -0.9 862,227 + +1.5 862,227 + -2.9 862,227 + -1.3 862,227 + +2.1 862,227 + -1.6 862,227 + +2.9 862,227 + +0.7 862,227 + +0.4 862,228 - -0.2 862,228 - +0.3 862,228 - -2.3 862,228 - +1.3 862,228 - +0.2 862,228 - -2.5 862,228 - -0.5 862,228 - +1.2 862,228 - -2.4 862,228 - -0.4 862,230 - -0.0 862,230 - -0.0 862,247 - +0.0 862,248 + +3.4 862,249 - -1.2 862,337 - -0.3 862,431 + Psest_0789 0.14 -0.8 862,432 - Psest_0789 0.14 -1.0 862,432 - Psest_0789 0.14 -1.9 862,618 + Psest_0789 0.67 -0.6 862,618 + Psest_0789 0.67 -0.9 862,618 + Psest_0789 0.67 +0.5 862,618 + Psest_0789 0.67 -0.9 862,618 + Psest_0789 0.67 -2.1 862,618 + Psest_0789 0.67 -0.9 862,619 - Psest_0789 0.67 -0.9 862,625 + Psest_0789 0.69 -2.3 862,626 - Psest_0789 0.69 -1.3 862,810 - -0.2 862,989 + Psest_0790 0.42 +2.5 863,083 + Psest_0790 0.63 +1.9 863,083 + Psest_0790 0.63 +0.4 863,084 - Psest_0790 0.64 -0.7
Or see this region's nucleotide sequence