Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0070

Experiment: Doxycycline hyclate 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0069 and Psest_0070 are separated by 419 nucleotidesPsest_0070 and Psest_0071 overlap by 13 nucleotides Psest_0069: Psest_0069 - UDP-glucose-4-epimerase, at 69,236 to 70,300 _0069 Psest_0070: Psest_0070 - Glycosyltransferase, at 70,720 to 71,904 _0070 Psest_0071: Psest_0071 - UDP-galactopyranose mutase, at 71,892 to 73,112 _0071 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 69.775 kb on - strand, within Psest_0069at 69.775 kb on - strand, within Psest_0069at 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.268 kb on + strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.269 kb on - strandat 70.272 kb on + strandat 70.272 kb on + strandat 70.272 kb on + strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.306 kb on + strandat 70.306 kb on + strandat 70.307 kb on - strandat 70.383 kb on - strandat 70.451 kb on - strandat 70.503 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.717 kb on + strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.718 kb on - strandat 70.745 kb on - strandat 70.894 kb on + strand, within Psest_0070at 70.894 kb on + strand, within Psest_0070at 70.894 kb on + strand, within Psest_0070at 70.894 kb on + strand, within Psest_0070at 70.895 kb on - strand, within Psest_0070at 70.895 kb on - strand, within Psest_0070at 70.895 kb on - strand, within Psest_0070at 70.895 kb on - strand, within Psest_0070at 71.056 kb on + strand, within Psest_0070at 71.098 kb on + strand, within Psest_0070at 71.098 kb on + strand, within Psest_0070at 71.098 kb on + strand, within Psest_0070at 71.099 kb on - strand, within Psest_0070at 71.099 kb on - strand, within Psest_0070at 71.099 kb on - strand, within Psest_0070at 71.099 kb on - strand, within Psest_0070at 71.152 kb on + strand, within Psest_0070at 71.152 kb on + strand, within Psest_0070at 71.152 kb on + strand, within Psest_0070at 71.152 kb on + strand, within Psest_0070at 71.153 kb on - strand, within Psest_0070at 71.267 kb on - strand, within Psest_0070at 71.267 kb on - strand, within Psest_0070at 71.404 kb on + strand, within Psest_0070at 71.404 kb on + strand, within Psest_0070at 71.405 kb on - strand, within Psest_0070at 71.405 kb on - strand, within Psest_0070at 71.560 kb on + strand, within Psest_0070at 71.561 kb on - strand, within Psest_0070at 71.561 kb on - strand, within Psest_0070at 71.561 kb on - strand, within Psest_0070at 71.561 kb on - strand, within Psest_0070at 71.561 kb on - strand, within Psest_0070at 71.578 kb on + strand, within Psest_0070at 71.579 kb on - strand, within Psest_0070at 71.579 kb on - strand, within Psest_0070at 71.579 kb on - strand, within Psest_0070at 71.579 kb on - strand, within Psest_0070at 71.662 kb on + strand, within Psest_0070at 71.662 kb on + strand, within Psest_0070at 71.662 kb on + strand, within Psest_0070at 71.663 kb on - strand, within Psest_0070at 71.663 kb on - strand, within Psest_0070at 71.719 kb on + strand, within Psest_0070at 71.848 kb on - strandat 71.982 kb on + strandat 71.982 kb on + strandat 72.097 kb on - strand, within Psest_0071at 72.103 kb on - strand, within Psest_0071at 72.180 kb on + strand, within Psest_0071at 72.181 kb on - strand, within Psest_0071at 72.181 kb on - strand, within Psest_0071at 72.181 kb on - strand, within Psest_0071at 72.211 kb on - strand, within Psest_0071at 72.559 kb on - strand, within Psest_0071at 72.559 kb on - strand, within Psest_0071at 72.615 kb on - strand, within Psest_0071at 72.648 kb on + strand, within Psest_0071at 72.684 kb on + strand, within Psest_0071at 72.684 kb on + strand, within Psest_0071at 72.684 kb on + strand, within Psest_0071at 72.684 kb on + strand, within Psest_0071at 72.685 kb on - strand, within Psest_0071at 72.685 kb on - strand, within Psest_0071at 72.685 kb on - strand, within Psest_0071at 72.685 kb on - strand, within Psest_0071at 72.685 kb on - strand, within Psest_0071at 72.693 kb on + strand, within Psest_0071at 72.694 kb on - strand, within Psest_0071at 72.804 kb on + strand, within Psest_0071at 72.822 kb on + strand, within Psest_0071at 72.823 kb on - strand, within Psest_0071at 72.868 kb on - strand, within Psest_0071at 72.868 kb on - strand, within Psest_0071at 72.868 kb on - strand, within Psest_0071at 72.868 kb on - strand, within Psest_0071at 72.868 kb on - strand, within Psest_0071at 72.868 kb on - strand, within Psest_0071at 72.898 kb on - strand, within Psest_0071at 72.898 kb on - strand, within Psest_0071at 72.900 kb on + strand, within Psest_0071at 72.901 kb on - strand, within Psest_0071

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml
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69,775 - Psest_0069 0.51 -2.2
69,775 - Psest_0069 0.51 -0.6
70,268 + +0.8
70,268 + -0.5
70,268 + +1.9
70,268 + -0.4
70,268 + -1.8
70,268 + -0.1
70,268 + +1.0
70,268 + +0.1
70,268 + -1.4
70,268 + -2.5
70,268 + -1.7
70,268 + -0.5
70,269 - -2.0
70,269 - -0.8
70,269 - +0.4
70,269 - -1.9
70,269 - +0.4
70,269 - -0.6
70,269 - +0.5
70,269 - -1.1
70,269 - -0.1
70,269 - +0.8
70,269 - +0.4
70,269 - -2.4
70,269 - +1.2
70,269 - -1.4
70,269 - +1.2
70,272 + +1.3
70,272 + -1.6
70,272 + -2.0
70,273 - -0.7
70,273 - +0.0
70,273 - -0.4
70,273 - +0.8
70,306 + -1.7
70,306 + -0.3
70,307 - -2.3
70,383 - -0.7
70,451 - -2.2
70,503 + +1.6
70,717 + -2.3
70,717 + -0.9
70,717 + -1.2
70,717 + +0.4
70,717 + -1.1
70,717 + -0.7
70,717 + -0.7
70,717 + +3.1
70,717 + -1.2
70,718 - +0.6
70,718 - -1.0
70,718 - -0.0
70,718 - +0.1
70,718 - -1.1
70,718 - -0.7
70,718 - +0.5
70,718 - -2.0
70,718 - -0.2
70,745 - +0.9
70,894 + Psest_0070 0.15 +0.2
70,894 + Psest_0070 0.15 +0.1
70,894 + Psest_0070 0.15 +1.9
70,894 + Psest_0070 0.15 -0.6
70,895 - Psest_0070 0.15 +0.2
70,895 - Psest_0070 0.15 +0.9
70,895 - Psest_0070 0.15 -1.6
70,895 - Psest_0070 0.15 +1.1
71,056 + Psest_0070 0.28 -0.5
71,098 + Psest_0070 0.32 -1.7
71,098 + Psest_0070 0.32 -0.8
71,098 + Psest_0070 0.32 -2.3
71,099 - Psest_0070 0.32 +1.1
71,099 - Psest_0070 0.32 +1.5
71,099 - Psest_0070 0.32 +0.2
71,099 - Psest_0070 0.32 +0.8
71,152 + Psest_0070 0.36 -1.7
71,152 + Psest_0070 0.36 -0.7
71,152 + Psest_0070 0.36 +1.5
71,152 + Psest_0070 0.36 +1.8
71,153 - Psest_0070 0.37 +0.5
71,267 - Psest_0070 0.46 +1.6
71,267 - Psest_0070 0.46 -3.3
71,404 + Psest_0070 0.58 +2.7
71,404 + Psest_0070 0.58 -2.3
71,405 - Psest_0070 0.58 -1.2
71,405 - Psest_0070 0.58 +1.1
71,560 + Psest_0070 0.71 -0.9
71,561 - Psest_0070 0.71 -0.3
71,561 - Psest_0070 0.71 -1.9
71,561 - Psest_0070 0.71 -1.0
71,561 - Psest_0070 0.71 +0.1
71,561 - Psest_0070 0.71 -2.0
71,578 + Psest_0070 0.72 +0.4
71,579 - Psest_0070 0.72 -0.4
71,579 - Psest_0070 0.72 +0.0
71,579 - Psest_0070 0.72 -0.5
71,579 - Psest_0070 0.72 -0.2
71,662 + Psest_0070 0.79 -0.6
71,662 + Psest_0070 0.79 +0.7
71,662 + Psest_0070 0.79 -0.3
71,663 - Psest_0070 0.80 +0.9
71,663 - Psest_0070 0.80 +1.4
71,719 + Psest_0070 0.84 -1.6
71,848 - +0.6
71,982 + -1.1
71,982 + -1.2
72,097 - Psest_0071 0.17 -2.4
72,103 - Psest_0071 0.17 +0.7
72,180 + Psest_0071 0.24 +2.0
72,181 - Psest_0071 0.24 +0.7
72,181 - Psest_0071 0.24 +0.3
72,181 - Psest_0071 0.24 -1.2
72,211 - Psest_0071 0.26 -0.3
72,559 - Psest_0071 0.55 -1.1
72,559 - Psest_0071 0.55 +0.4
72,615 - Psest_0071 0.59 -1.7
72,648 + Psest_0071 0.62 +1.3
72,684 + Psest_0071 0.65 +0.3
72,684 + Psest_0071 0.65 -1.5
72,684 + Psest_0071 0.65 -0.3
72,684 + Psest_0071 0.65 -0.5
72,685 - Psest_0071 0.65 +1.6
72,685 - Psest_0071 0.65 -1.2
72,685 - Psest_0071 0.65 +0.6
72,685 - Psest_0071 0.65 -1.4
72,685 - Psest_0071 0.65 -1.2
72,693 + Psest_0071 0.66 +0.9
72,694 - Psest_0071 0.66 -1.5
72,804 + Psest_0071 0.75 +2.4
72,822 + Psest_0071 0.76 +0.2
72,823 - Psest_0071 0.76 -0.8
72,868 - Psest_0071 0.80 -2.6
72,868 - Psest_0071 0.80 -0.9
72,868 - Psest_0071 0.80 -0.6
72,868 - Psest_0071 0.80 -0.9
72,868 - Psest_0071 0.80 +1.1
72,868 - Psest_0071 0.80 -0.7
72,898 - Psest_0071 0.82 -0.4
72,898 - Psest_0071 0.82 -1.6
72,900 + Psest_0071 0.83 +0.7
72,901 - Psest_0071 0.83 +0.9

Or see this region's nucleotide sequence