Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0688 and Psest_0689 are separated by 157 nucleotides Psest_0689 and Psest_0690 are separated by 116 nucleotides Psest_0690 and Psest_0691 are separated by 204 nucleotides Psest_0691 and Psest_0692 overlap by 4 nucleotides Psest_0692 and Psest_0693 are separated by 174 nucleotides
Psest_0688: Psest_0688 - adenylosuccinate synthase, at 752,018 to 753,313
_0688
Psest_0689: Psest_0689 - tRNA_Leu_CAG, at 753,471 to 753,557
_0689
Psest_0690: Psest_0690 - tRNA_Leu_CAG, at 753,674 to 753,760
_0690
Psest_0691: Psest_0691 - ribonuclease R, at 753,965 to 756,466
_0691
Psest_0692: Psest_0692 - rRNA methylase, putative, group 3, at 756,463 to 757,218
_0692
Psest_0693: Psest_0693 - His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 757,393 to 759,555
_0693
Position (kb) 753
754
755
756
757 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 753.305 kb on + strand at 753.306 kb on - strand at 753.529 kb on - strand, within Psest_0689 at 753.596 kb on - strand at 753.671 kb on - strand at 753.871 kb on - strand at 753.939 kb on - strand at 753.964 kb on - strand at 754.017 kb on - strand at 754.185 kb on - strand at 754.185 kb on - strand at 754.185 kb on - strand at 754.202 kb on + strand at 754.202 kb on + strand at 754.202 kb on + strand at 754.203 kb on - strand at 754.203 kb on - strand at 754.625 kb on + strand, within Psest_0691 at 754.625 kb on + strand, within Psest_0691 at 754.625 kb on + strand, within Psest_0691 at 754.625 kb on + strand, within Psest_0691 at 754.625 kb on + strand, within Psest_0691 at 754.625 kb on + strand, within Psest_0691 at 754.626 kb on - strand, within Psest_0691 at 754.626 kb on - strand, within Psest_0691 at 754.626 kb on - strand, within Psest_0691 at 754.626 kb on - strand, within Psest_0691 at 754.626 kb on - strand, within Psest_0691 at 754.626 kb on - strand, within Psest_0691 at 754.626 kb on - strand, within Psest_0691 at 754.639 kb on + strand, within Psest_0691 at 754.826 kb on + strand, within Psest_0691 at 754.877 kb on + strand, within Psest_0691 at 754.877 kb on + strand, within Psest_0691 at 754.904 kb on + strand, within Psest_0691 at 754.904 kb on + strand, within Psest_0691 at 754.905 kb on - strand, within Psest_0691 at 754.961 kb on + strand, within Psest_0691 at 754.961 kb on + strand, within Psest_0691 at 754.962 kb on - strand, within Psest_0691 at 754.962 kb on - strand, within Psest_0691 at 755.063 kb on - strand, within Psest_0691 at 755.138 kb on + strand, within Psest_0691 at 755.138 kb on + strand, within Psest_0691 at 755.138 kb on + strand, within Psest_0691 at 755.139 kb on - strand, within Psest_0691 at 755.139 kb on - strand, within Psest_0691 at 755.139 kb on - strand, within Psest_0691 at 755.139 kb on - strand, within Psest_0691 at 755.246 kb on + strand, within Psest_0691 at 755.246 kb on + strand, within Psest_0691 at 755.247 kb on - strand, within Psest_0691 at 755.247 kb on - strand, within Psest_0691 at 755.311 kb on + strand, within Psest_0691 at 755.312 kb on - strand, within Psest_0691 at 755.454 kb on - strand, within Psest_0691 at 755.509 kb on - strand, within Psest_0691 at 755.688 kb on - strand, within Psest_0691 at 755.696 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.830 kb on + strand, within Psest_0691 at 755.831 kb on - strand, within Psest_0691 at 755.831 kb on - strand, within Psest_0691 at 755.831 kb on - strand, within Psest_0691 at 755.831 kb on - strand, within Psest_0691 at 755.831 kb on - strand, within Psest_0691 at 755.831 kb on - strand, within Psest_0691 at 755.831 kb on - strand, within Psest_0691 at 755.831 kb on - strand, within Psest_0691 at 755.834 kb on + strand, within Psest_0691 at 755.834 kb on + strand, within Psest_0691 at 755.834 kb on + strand, within Psest_0691 at 755.979 kb on + strand, within Psest_0691 at 755.979 kb on + strand, within Psest_0691 at 756.025 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.029 kb on + strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.030 kb on - strand, within Psest_0691 at 756.046 kb on - strand, within Psest_0691 at 756.072 kb on - strand, within Psest_0691 at 756.074 kb on + strand, within Psest_0691 at 756.075 kb on - strand, within Psest_0691 at 756.075 kb on - strand, within Psest_0691 at 756.201 kb on + strand, within Psest_0691 at 756.279 kb on + strand at 756.279 kb on + strand at 756.280 kb on - strand at 756.280 kb on - strand at 756.280 kb on - strand at 756.805 kb on - strand, within Psest_0692 at 756.855 kb on + strand, within Psest_0692 at 757.015 kb on + strand, within Psest_0692 at 757.047 kb on + strand, within Psest_0692 at 757.047 kb on + strand, within Psest_0692 at 757.314 kb on + strand at 757.314 kb on + strand at 757.315 kb on - strand at 757.392 kb on + strand at 757.392 kb on + strand at 757.392 kb on + strand at 757.392 kb on + strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.393 kb on - strand at 757.444 kb on + strand at 757.444 kb on + strand at 757.444 kb on + strand at 757.444 kb on + strand at 757.444 kb on + strand at 757.444 kb on + strand at 757.444 kb on + strand at 757.444 kb on + strand at 757.444 kb on + strand at 757.445 kb on - strand at 757.445 kb on - strand at 757.445 kb on - strand at 757.445 kb on - strand at 757.445 kb on - strand at 757.445 kb on - strand at 757.445 kb on - strand at 757.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 753,305 + -1.3 753,306 - -0.3 753,529 - Psest_0689 0.67 +0.4 753,596 - -1.4 753,671 - -0.0 753,871 - -1.9 753,939 - -3.0 753,964 - -2.8 754,017 - -1.8 754,185 - -1.6 754,185 - -2.5 754,185 - -2.1 754,202 + +0.4 754,202 + -0.4 754,202 + +1.4 754,203 - -1.7 754,203 - -0.4 754,625 + Psest_0691 0.26 +0.2 754,625 + Psest_0691 0.26 -2.0 754,625 + Psest_0691 0.26 -1.7 754,625 + Psest_0691 0.26 -2.7 754,625 + Psest_0691 0.26 -3.9 754,625 + Psest_0691 0.26 -4.0 754,626 - Psest_0691 0.26 +0.4 754,626 - Psest_0691 0.26 -4.0 754,626 - Psest_0691 0.26 -0.9 754,626 - Psest_0691 0.26 -0.9 754,626 - Psest_0691 0.26 -4.0 754,626 - Psest_0691 0.26 -1.4 754,626 - Psest_0691 0.26 -2.1 754,639 + Psest_0691 0.27 -2.3 754,826 + Psest_0691 0.34 -2.3 754,877 + Psest_0691 0.36 -1.9 754,877 + Psest_0691 0.36 -3.5 754,904 + Psest_0691 0.38 -3.8 754,904 + Psest_0691 0.38 -2.9 754,905 - Psest_0691 0.38 +0.8 754,961 + Psest_0691 0.40 -1.9 754,961 + Psest_0691 0.40 -1.1 754,962 - Psest_0691 0.40 -2.9 754,962 - Psest_0691 0.40 -2.7 755,063 - Psest_0691 0.44 -1.7 755,138 + Psest_0691 0.47 -1.6 755,138 + Psest_0691 0.47 -0.9 755,138 + Psest_0691 0.47 -0.6 755,139 - Psest_0691 0.47 -2.9 755,139 - Psest_0691 0.47 -2.3 755,139 - Psest_0691 0.47 -3.1 755,139 - Psest_0691 0.47 -1.6 755,246 + Psest_0691 0.51 -2.3 755,246 + Psest_0691 0.51 -1.4 755,247 - Psest_0691 0.51 -2.3 755,247 - Psest_0691 0.51 -0.4 755,311 + Psest_0691 0.54 -1.0 755,312 - Psest_0691 0.54 -0.9 755,454 - Psest_0691 0.60 -1.6 755,509 - Psest_0691 0.62 -1.7 755,688 - Psest_0691 0.69 -5.7 755,696 + Psest_0691 0.69 -2.8 755,830 + Psest_0691 0.75 -4.3 755,830 + Psest_0691 0.75 -2.1 755,830 + Psest_0691 0.75 -1.4 755,830 + Psest_0691 0.75 -1.4 755,830 + Psest_0691 0.75 -2.8 755,830 + Psest_0691 0.75 -2.3 755,830 + Psest_0691 0.75 -4.3 755,830 + Psest_0691 0.75 -2.9 755,830 + Psest_0691 0.75 -3.5 755,831 - Psest_0691 0.75 -4.0 755,831 - Psest_0691 0.75 -5.0 755,831 - Psest_0691 0.75 -2.9 755,831 - Psest_0691 0.75 -1.7 755,831 - Psest_0691 0.75 -1.2 755,831 - Psest_0691 0.75 -2.1 755,831 - Psest_0691 0.75 -1.9 755,831 - Psest_0691 0.75 -1.1 755,834 + Psest_0691 0.75 -2.0 755,834 + Psest_0691 0.75 +1.4 755,834 + Psest_0691 0.75 -2.7 755,979 + Psest_0691 0.80 -0.6 755,979 + Psest_0691 0.80 -2.6 756,025 + Psest_0691 0.82 -0.1 756,029 + Psest_0691 0.82 -0.9 756,029 + Psest_0691 0.82 -3.3 756,029 + Psest_0691 0.82 -3.7 756,029 + Psest_0691 0.82 -1.7 756,029 + Psest_0691 0.82 -1.6 756,029 + Psest_0691 0.82 -2.3 756,029 + Psest_0691 0.82 -4.7 756,029 + Psest_0691 0.82 -1.6 756,029 + Psest_0691 0.82 -2.6 756,029 + Psest_0691 0.82 -1.8 756,030 - Psest_0691 0.83 -0.6 756,030 - Psest_0691 0.83 -0.4 756,030 - Psest_0691 0.83 -4.1 756,030 - Psest_0691 0.83 -1.4 756,030 - Psest_0691 0.83 -2.7 756,030 - Psest_0691 0.83 -0.6 756,030 - Psest_0691 0.83 -2.9 756,030 - Psest_0691 0.83 -2.6 756,030 - Psest_0691 0.83 -0.7 756,030 - Psest_0691 0.83 -1.7 756,030 - Psest_0691 0.83 -2.5 756,030 - Psest_0691 0.83 -1.6 756,030 - Psest_0691 0.83 -0.4 756,030 - Psest_0691 0.83 +0.4 756,030 - Psest_0691 0.83 -1.5 756,030 - Psest_0691 0.83 -1.4 756,030 - Psest_0691 0.83 -3.4 756,030 - Psest_0691 0.83 -1.4 756,030 - Psest_0691 0.83 -2.9 756,046 - Psest_0691 0.83 -1.3 756,072 - Psest_0691 0.84 +0.4 756,074 + Psest_0691 0.84 -3.3 756,075 - Psest_0691 0.84 -3.9 756,075 - Psest_0691 0.84 -3.3 756,201 + Psest_0691 0.89 -1.5 756,279 + -0.4 756,279 + -2.4 756,280 - +0.2 756,280 - -2.4 756,280 - -2.6 756,805 - Psest_0692 0.45 -1.1 756,855 + Psest_0692 0.52 -0.9 757,015 + Psest_0692 0.73 +0.9 757,047 + Psest_0692 0.77 -2.5 757,047 + Psest_0692 0.77 -1.2 757,314 + -0.3 757,314 + -2.3 757,315 - -0.8 757,392 + +1.1 757,392 + +0.5 757,392 + +0.3 757,392 + -1.5 757,393 - -0.3 757,393 - -0.1 757,393 - -0.2 757,393 - -0.4 757,393 - -0.9 757,393 - -0.5 757,393 - -0.8 757,393 - -0.2 757,393 - +0.4 757,393 - -0.8 757,393 - -0.4 757,393 - -0.6 757,393 - -1.1 757,393 - -0.4 757,393 - -0.4 757,393 - -0.3 757,444 + -0.1 757,444 + +0.7 757,444 + +0.2 757,444 + -1.9 757,444 + -1.7 757,444 + +0.3 757,444 + -1.2 757,444 + -2.5 757,444 + +0.7 757,445 - -0.8 757,445 - -0.2 757,445 - -0.3 757,445 - -1.0 757,445 - -1.1 757,445 - -0.1 757,445 - +0.4 757,445 - -0.3
Or see this region's nucleotide sequence