Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0676 and Psest_0677 are separated by 21 nucleotides Psest_0677 and Psest_0678 are separated by 74 nucleotides
Psest_0676: Psest_0676 - ATP-dependent metalloprotease FtsH, at 737,328 to 739,175
_0676
Psest_0677: Psest_0677 - iron-sulfur cluster binding protein, putative, at 739,197 to 740,270
_0677
Psest_0678: Psest_0678 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 740,345 to 741,835
_0678
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 738.629 kb on - strand, within Psest_0676 at 738.786 kb on + strand, within Psest_0676 at 738.786 kb on + strand, within Psest_0676 at 738.786 kb on + strand, within Psest_0676 at 738.786 kb on + strand, within Psest_0676 at 738.786 kb on + strand, within Psest_0676 at 738.787 kb on - strand, within Psest_0676 at 738.787 kb on - strand, within Psest_0676 at 738.787 kb on - strand, within Psest_0676 at 738.787 kb on - strand, within Psest_0676 at 738.787 kb on - strand, within Psest_0676 at 738.787 kb on - strand, within Psest_0676 at 738.787 kb on - strand, within Psest_0676 at 738.788 kb on + strand, within Psest_0676 at 738.788 kb on + strand, within Psest_0676 at 738.788 kb on + strand, within Psest_0676 at 738.789 kb on - strand, within Psest_0676 at 738.789 kb on - strand, within Psest_0676 at 738.789 kb on - strand, within Psest_0676 at 738.789 kb on - strand, within Psest_0676 at 738.960 kb on + strand, within Psest_0676 at 738.960 kb on + strand, within Psest_0676 at 738.961 kb on - strand, within Psest_0676 at 739.040 kb on - strand at 739.537 kb on - strand, within Psest_0677 at 739.600 kb on + strand, within Psest_0677 at 739.969 kb on + strand, within Psest_0677 at 739.969 kb on + strand, within Psest_0677 at 739.969 kb on + strand, within Psest_0677 at 739.969 kb on + strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 740.023 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.108 kb on - strand, within Psest_0677 at 740.108 kb on - strand, within Psest_0677 at 740.108 kb on - strand, within Psest_0677 at 740.303 kb on + strand at 740.303 kb on + strand at 740.304 kb on - strand at 740.304 kb on - strand at 740.304 kb on - strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.372 kb on + strand at 740.372 kb on + strand at 740.372 kb on + strand at 740.374 kb on + strand at 740.374 kb on + strand at 740.374 kb on + strand at 740.762 kb on + strand, within Psest_0678 at 741.251 kb on + strand, within Psest_0678
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 738,629 - Psest_0676 0.70 +5.6 738,786 + Psest_0676 0.79 -0.3 738,786 + Psest_0676 0.79 +2.5 738,786 + Psest_0676 0.79 +0.5 738,786 + Psest_0676 0.79 -1.7 738,786 + Psest_0676 0.79 +0.1 738,787 - Psest_0676 0.79 +2.3 738,787 - Psest_0676 0.79 +0.7 738,787 - Psest_0676 0.79 +0.2 738,787 - Psest_0676 0.79 -1.6 738,787 - Psest_0676 0.79 +0.8 738,787 - Psest_0676 0.79 -1.1 738,787 - Psest_0676 0.79 -0.2 738,788 + Psest_0676 0.79 +1.2 738,788 + Psest_0676 0.79 +1.4 738,788 + Psest_0676 0.79 +0.0 738,789 - Psest_0676 0.79 -0.9 738,789 - Psest_0676 0.79 +0.2 738,789 - Psest_0676 0.79 -1.9 738,789 - Psest_0676 0.79 -2.0 738,960 + Psest_0676 0.88 +1.7 738,960 + Psest_0676 0.88 -1.2 738,961 - Psest_0676 0.88 +0.9 739,040 - +0.5 739,537 - Psest_0677 0.32 -1.2 739,600 + Psest_0677 0.38 -1.5 739,969 + Psest_0677 0.72 -1.5 739,969 + Psest_0677 0.72 -0.5 739,969 + Psest_0677 0.72 +0.5 739,969 + Psest_0677 0.72 +2.9 739,970 - Psest_0677 0.72 -1.9 739,970 - Psest_0677 0.72 -2.9 739,970 - Psest_0677 0.72 -1.9 739,970 - Psest_0677 0.72 -1.1 739,970 - Psest_0677 0.72 -0.2 739,970 - Psest_0677 0.72 +0.5 739,970 - Psest_0677 0.72 +0.3 740,023 + Psest_0677 0.77 +0.1 740,107 + Psest_0677 0.85 -0.9 740,107 + Psest_0677 0.85 -0.7 740,107 + Psest_0677 0.85 -2.3 740,107 + Psest_0677 0.85 -0.8 740,107 + Psest_0677 0.85 -3.0 740,107 + Psest_0677 0.85 -0.0 740,107 + Psest_0677 0.85 +2.0 740,108 - Psest_0677 0.85 -1.5 740,108 - Psest_0677 0.85 +3.1 740,108 - Psest_0677 0.85 -1.0 740,303 + +1.7 740,303 + +0.1 740,304 - +0.8 740,304 - -1.3 740,304 - +0.4 740,305 + +2.0 740,305 + +1.3 740,305 + -0.8 740,305 + +2.1 740,305 + +4.0 740,305 + +0.1 740,372 + -0.5 740,372 + -2.0 740,372 + +0.4 740,374 + +0.1 740,374 + +0.4 740,374 + +1.0 740,762 + Psest_0678 0.28 -0.6 741,251 + Psest_0678 0.61 +0.4
Or see this region's nucleotide sequence