Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0452 and Psest_0453 overlap by 1 nucleotides Psest_0453 and Psest_0454 are separated by 43 nucleotides Psest_0454 and Psest_0455 are separated by 8 nucleotides
Psest_0452: Psest_0452 - lipopolysaccharide heptosyltransferase I, at 498,209 to 499,210
_0452
Psest_0453: Psest_0453 - Glycosyltransferase, at 499,210 to 500,331
_0453
Psest_0454: Psest_0454 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 500,375 to 501,181
_0454
Psest_0455: Psest_0455 - ADP-heptose:LPS heptosyltransferase, at 501,190 to 502,146
_0455
Position (kb)
499
500
501 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 500.374 kb on + strand at 501.236 kb on + strand at 501.236 kb on + strand at 501.236 kb on + strand at 501.236 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.272 kb on + strand at 501.272 kb on + strand at 501.309 kb on + strand, within Psest_0455 at 501.309 kb on + strand, within Psest_0455 at 501.318 kb on + strand, within Psest_0455 at 501.318 kb on + strand, within Psest_0455
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 500,374 + -0.1 501,236 + -0.5 501,236 + +1.3 501,236 + +4.0 501,236 + -0.2 501,251 + -1.6 501,251 + -0.2 501,251 + +0.7 501,251 + -1.1 501,251 + +0.1 501,251 + +0.5 501,251 + +0.4 501,253 + +1.7 501,253 + -0.7 501,253 + -0.8 501,253 + -0.7 501,253 + +2.1 501,253 + -3.1 501,253 + +0.1 501,253 + -0.2 501,253 + -1.9 501,253 + -2.5 501,253 + -0.7 501,253 + +0.5 501,253 + -0.0 501,272 + -2.1 501,272 + -1.1 501,309 + Psest_0455 0.12 -0.7 501,309 + Psest_0455 0.12 +0.3 501,318 + Psest_0455 0.13 +1.3 501,318 + Psest_0455 0.13 -1.7
Or see this region's nucleotide sequence