Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4331

Experiment: Doxycycline hyclate 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0002 mg/ml
4,529,690	+		Psest_4329	0.20	-3.2
4,529,690	+		Psest_4329	0.20	+1.9
4,529,690	+		Psest_4329	0.20	+2.0
4,529,691	-		Psest_4329	0.21	-0.2
4,529,691	-		Psest_4329	0.21	-0.4
4,529,691	-		Psest_4329	0.21	+0.1
4,529,691	-		Psest_4329	0.21	+1.0
4,529,691	-		Psest_4329	0.21	+1.3
4,529,691	-		Psest_4329	0.21	+0.6
4,529,691	-		Psest_4329	0.21	+0.4
4,529,744	+		Psest_4329	0.26	-0.7
4,529,744	+		Psest_4329	0.26	-0.3
4,529,745	-		Psest_4329	0.27	+1.6
4,529,745	-		Psest_4329	0.27	+1.6
4,529,840	+		Psest_4329	0.37	-1.4
4,529,840	+		Psest_4329	0.37	-1.0
4,529,840	+		Psest_4329	0.37	+0.6
4,529,840	+		Psest_4329	0.37	+1.3
4,529,841	-		Psest_4329	0.37	+0.2
4,529,841	-		Psest_4329	0.37	-1.8
4,529,841	-		Psest_4329	0.37	+2.4
4,529,841	-		Psest_4329	0.37	-0.3
4,529,841	-		Psest_4329	0.37	+1.0
4,529,841	-		Psest_4329	0.37	+2.0
4,529,921	+		Psest_4329	0.46	+0.6
4,530,111	+		Psest_4329	0.67	-0.8
4,530,112	-		Psest_4329	0.67	+0.9
4,530,112	-		Psest_4329	0.67	-1.4
4,530,152	+		Psest_4329	0.72	-2.7
4,530,152	+		Psest_4329	0.72	+0.9
4,530,152	+		Psest_4329	0.72	-2.0
4,530,152	+		Psest_4329	0.72	-2.1
4,530,152	+		Psest_4329	0.72	+1.0
4,530,152	+		Psest_4329	0.72	-2.2
4,530,153	-		Psest_4329	0.72	+2.0
4,530,153	-		Psest_4329	0.72	+0.0
4,530,153	-		Psest_4329	0.72	-2.3
4,530,153	-		Psest_4329	0.72	-0.4
4,530,165	-		Psest_4329	0.73	-1.6
4,530,165	-		Psest_4329	0.73	-1.4
4,530,165	-		Psest_4329	0.73	+0.2
4,530,165	-		Psest_4329	0.73	-2.6
4,530,200	+		Psest_4329	0.77	+1.6
4,530,200	+		Psest_4329	0.77	+1.5
4,530,200	+		Psest_4329	0.77	-1.7
4,530,200	+		Psest_4329	0.77	+0.6
4,530,201	-		Psest_4329	0.77	-0.3
4,530,201	-		Psest_4329	0.77	+1.4
4,530,392	+				+0.0
4,530,392	+				-1.9
4,530,392	+				+0.0
4,530,392	+				-0.4
4,530,392	+				-0.1
4,530,392	+				-2.9
4,530,393	-				+3.0
4,530,402	-				-0.0
4,530,402	-				-0.3
4,530,402	-				-0.6
4,530,402	-				-0.6
4,530,442	+		Psest_4330	0.17	+0.3
4,530,442	+		Psest_4330	0.17	+3.0
4,530,443	-		Psest_4330	0.17	+2.1
4,530,443	-		Psest_4330	0.17	-0.3
4,530,443	-		Psest_4330	0.17	+2.7
4,530,443	-		Psest_4330	0.17	+0.6
4,530,443	-		Psest_4330	0.17	+2.8
4,530,443	-		Psest_4330	0.17	-0.3
4,530,443	-		Psest_4330	0.17	+0.7
4,530,582	+		Psest_4330	0.85	+1.9
4,530,646	+				-1.2
4,530,646	+				+0.2
4,530,646	+				+0.8
4,530,646	+				-1.0
4,530,646	+				-1.7
4,530,646	+				+0.3
4,530,646	+				-0.3
4,530,647	-				+1.7
4,530,647	-				-0.4
4,530,647	-				-0.5
4,530,647	-				-1.0
4,530,647	-				-1.3
4,530,648	+				-0.8
4,530,648	+				+0.2
4,530,649	-				-2.1
4,530,649	-				-0.2
4,530,664	+				-0.1
4,530,664	+				-1.0
4,530,664	+				-1.6
4,530,665	-				-1.2
4,530,665	-				+0.5
4,530,665	-				+1.0
4,531,044	-		Psest_4331	0.49	-0.8
4,531,096	+		Psest_4331	0.56	-2.7
4,531,096	+		Psest_4331	0.56	+0.2
4,531,096	+		Psest_4331	0.56	+0.4
4,531,096	+		Psest_4331	0.56	+3.8
4,531,096	+		Psest_4331	0.56	+1.6
4,531,096	+		Psest_4331	0.56	-0.2
4,531,096	+		Psest_4331	0.56	+0.5
4,531,096	+		Psest_4331	0.56	+3.0
4,531,096	+		Psest_4331	0.56	+0.4
4,531,096	+		Psest_4331	0.56	-0.7
4,531,096	+		Psest_4331	0.56	-0.3
4,531,096	+		Psest_4331	0.56	+0.0
4,531,096	+		Psest_4331	0.56	+1.1
4,531,096	+		Psest_4331	0.56	+2.7
4,531,096	+		Psest_4331	0.56	-1.0
4,531,096	+		Psest_4331	0.56	+1.1
4,531,097	-		Psest_4331	0.56	+2.3
4,531,097	-		Psest_4331	0.56	+0.2
4,531,097	-		Psest_4331	0.56	+2.3
4,531,097	-		Psest_4331	0.56	-1.5
4,531,097	-		Psest_4331	0.56	+2.4
4,531,097	-		Psest_4331	0.56	-2.3
4,531,100	+		Psest_4331	0.57	-0.1
4,531,100	+				+5.6
4,531,347	+				-0.0
4,531,351	+				+0.5
4,531,351	+				-0.6
4,531,351	+				+0.0
4,531,351	+				+0.6
4,531,351	+				+0.4
4,531,351	+				+3.4
4,531,351	+				-1.6
4,531,351	+				+3.6
4,531,351	+				+0.7
4,531,352	-				+1.2
4,531,352	-				+0.8
4,531,502	+		Psest_4332	0.19	+0.2
4,531,503	-		Psest_4332	0.19	+1.3
4,531,503	-		Psest_4332	0.19	+1.9
4,531,538	+		Psest_4332	0.25	+1.7
4,531,538	+		Psest_4332	0.25	-1.5
4,531,539	-		Psest_4332	0.25	-0.7
4,531,539	-		Psest_4332	0.25	+0.0
4,531,548	+		Psest_4332	0.27	-2.0
4,531,549	-		Psest_4332	0.27	-1.6
4,531,549	-		Psest_4332	0.27	+0.2
4,531,549	-		Psest_4332	0.27	-0.4
4,531,549	-		Psest_4332	0.27	+1.1
4,531,670	+		Psest_4332	0.48	+1.1
4,531,671	-		Psest_4332	0.48	+2.5
4,531,760	+		Psest_4332	0.63	-1.6
4,531,823	+		Psest_4332	0.74	+1.8
4,531,823	+		Psest_4332	0.74	+1.8
4,531,824	-		Psest_4332	0.74	-0.8
4,531,824	-		Psest_4332	0.74	+0.0
4,531,824	-		Psest_4332	0.74	+1.1
4,531,861	-		Psest_4332	0.81	-0.7
4,531,861	-		Psest_4332	0.81	+1.8
4,531,899	-		Psest_4332	0.87	-0.3
4,531,943	+				-0.9
4,532,097	+				-0.0
4,532,097	+				+3.7
4,532,098	-				-1.6
4,532,098	-				+4.5
4,532,100	-				+0.8
4,532,148	+		Psest_4333	0.12	-1.2
4,532,259	+		Psest_4333	0.22	+1.1
4,532,259	+		Psest_4333	0.22	-0.7
4,532,259	+		Psest_4333	0.22	+0.2
4,532,259	+		Psest_4333	0.22	+2.1
4,532,259	+		Psest_4333	0.22	+0.5
4,532,259	+		Psest_4333	0.22	-0.5
4,532,260	-		Psest_4333	0.22	+0.9
4,532,386	+		Psest_4333	0.34	-1.0