Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3987

Experiment: Doxycycline hyclate 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0002 mg/ml
4,155,953	-				-1.3
4,156,096	+				+0.8
4,156,097	-				-2.3
4,156,097	-				-1.8
4,156,103	-				-2.7
4,156,114	+				-0.1
4,156,114	+				-0.0
4,156,114	+				-2.0
4,156,114	+				-0.7
4,156,114	+				-2.2
4,156,114	+				+0.5
4,156,114	+				-1.1
4,156,114	+				+2.2
4,156,115	-				+0.8
4,156,115	-				+1.1
4,156,115	-				-1.4
4,156,115	-				-1.3
4,156,115	-				+2.2
4,156,120	+				-0.1
4,156,121	-				-2.2
4,156,121	-				+0.1
4,156,194	+				-1.7
4,156,194	+				-2.2
4,156,194	+				+1.0
4,156,194	+				-0.6
4,156,194	+				+0.5
4,156,194	+				-0.7
4,156,194	+				+1.7
4,156,194	+				-1.5
4,156,194	+				-2.0
4,156,194	+				-3.0
4,156,194	+				-1.9
4,156,194	+				+0.6
4,156,194	+				-1.0
4,156,194	+				+0.1
4,156,194	+				-0.7
4,156,195	-				-0.1
4,156,195	-				-1.0
4,156,195	-				-2.1
4,156,195	-				-0.6
4,156,195	-				-2.0
4,156,195	-				-0.8
4,156,195	-				-1.1
4,156,195	-				+0.7
4,156,200	+				+1.3
4,156,200	+				-1.0
4,156,200	+				-1.1
4,156,200	+				-0.3
4,156,200	+				-0.6
4,156,201	-				+2.4
4,156,201	-				+3.3
4,156,201	-				+2.1
4,156,201	-				+1.7
4,156,201	-				+1.2
4,156,201	-				+2.4
4,156,201	-				-1.2
4,156,224	+				-2.2
4,156,224	+				-1.5
4,156,224	+				+0.5
4,156,224	+				+0.8
4,156,224	+				-1.2
4,156,225	-				-0.6
4,156,225	-				-1.1
4,156,225	-				+0.6
4,156,225	-				+0.5
4,156,225	-				+0.2
4,156,225	-				-2.6
4,156,225	-				+0.3
4,156,225	-				+1.6
4,156,225	-				+1.0
4,156,225	-				+0.4
4,156,225	-				-1.1
4,156,225	-				-0.2
4,156,225	-				-1.5
4,156,225	-				-1.7
4,156,225	-				-2.8
4,156,225	-				-0.8
4,156,225	-				-0.3
4,156,225	-				-0.4
4,156,225	-				+0.5
4,156,225	-				+1.4
4,156,225	-				-0.5
4,156,225	-				-3.1
4,156,225	-				-0.4
4,156,225	-				+2.9
4,156,225	-				+2.7
4,156,294	+		Psest_3986	0.31	-0.2
4,156,295	-		Psest_3986	0.31	+2.1
4,156,295	-		Psest_3986	0.31	+0.5
4,156,296	+		Psest_3986	0.32	+1.3
4,156,296	+		Psest_3986	0.32	-1.8
4,156,296	+		Psest_3986	0.32	-0.4
4,156,297	-		Psest_3986	0.32	-1.8
4,156,297	-		Psest_3986	0.32	-0.5
4,156,297	-		Psest_3986	0.32	+1.2
4,156,297	-		Psest_3986	0.32	-1.3
4,156,300	+		Psest_3986	0.33	+0.5
4,156,300	+		Psest_3986	0.33	-2.1
4,156,300	+		Psest_3986	0.33	+0.0
4,156,301	-		Psest_3986	0.34	+1.4
4,156,301	-		Psest_3986	0.34	-2.1
4,156,301	-		Psest_3986	0.34	+1.0
4,156,358	-		Psest_3986	0.57	-1.7
4,156,367	+		Psest_3986	0.61	-0.2
4,156,450	+				+1.5
4,156,573	+				+1.2
4,156,573	+				+1.8
4,156,574	-				+3.0
4,156,574	-				-0.3
4,156,820	+		Psest_3987	0.44	-0.3
4,156,820	+		Psest_3987	0.44	-0.7
4,156,821	-		Psest_3987	0.45	+1.2
4,156,821	-		Psest_3987	0.45	-0.8
4,156,821	-		Psest_3987	0.45	-3.3
4,156,902	+		Psest_3987	0.58	+0.7
4,157,017	+		Psest_3987	0.77	-1.7
4,157,017	+		Psest_3987	0.77	-1.5
4,157,017	+		Psest_3987	0.77	+0.5
4,157,017	+		Psest_3987	0.77	-1.8
4,157,017	+		Psest_3987	0.77	+1.4
4,157,017	+		Psest_3987	0.77	-0.5
4,157,018	-		Psest_3987	0.77	-2.0
4,157,108	+				+0.3
4,157,109	-				-0.1
4,157,169	+				-1.7
4,157,169	+				+0.9
4,157,170	-				+3.2
4,157,170	-				-1.3
4,157,191	+				+0.8
4,157,191	+				-0.1
4,157,223	-				-2.5
4,157,223	-				+1.5
4,157,322	+				+2.4
4,157,322	+				+1.4
4,157,637	+		Psest_3988	0.20	+1.0
4,157,638	-		Psest_3988	0.21	-0.2
4,157,662	+		Psest_3988	0.22	-0.6
4,157,663	-		Psest_3988	0.22	+2.0
4,157,686	-		Psest_3988	0.24	-0.4
4,157,747	-		Psest_3988	0.28	+0.6
4,157,809	-		Psest_3988	0.32	+1.2
4,157,849	+		Psest_3988	0.34	+1.8
4,157,980	-		Psest_3988	0.43	+1.1
4,157,996	-		Psest_3988	0.44	+0.2
4,158,094	-		Psest_3988	0.50	+0.7