Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3865

Experiment: Doxycycline hyclate 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0002 mg/ml
4,035,996	-				-1.2
4,035,996	-				-1.1
4,036,042	+				+0.0
4,036,132	+				+1.0
4,036,186	-				-0.8
4,036,241	+		Psest_3864	0.11	+1.5
4,036,241	+		Psest_3864	0.11	-2.0
4,036,242	-		Psest_3864	0.11	-1.1
4,036,277	+		Psest_3864	0.16	-0.6
4,036,277	+		Psest_3864	0.16	-1.1
4,036,277	+		Psest_3864	0.16	+0.0
4,036,278	-		Psest_3864	0.16	+1.4
4,036,301	+		Psest_3864	0.20	+0.3
4,036,301	+		Psest_3864	0.20	+0.9
4,036,301	+		Psest_3864	0.20	-0.1
4,036,301	+		Psest_3864	0.20	+0.7
4,036,301	+		Psest_3864	0.20	+1.5
4,036,302	-		Psest_3864	0.20	-1.0
4,036,302	-		Psest_3864	0.20	+0.6
4,036,302	-		Psest_3864	0.20	+1.1
4,036,302	-		Psest_3864	0.20	+1.6
4,036,302	-		Psest_3864	0.20	-0.4
4,036,310	+		Psest_3864	0.21	+0.9
4,036,310	+		Psest_3864	0.21	+0.1
4,036,310	+		Psest_3864	0.21	-1.6
4,036,310	+		Psest_3864	0.21	+1.3
4,036,311	-		Psest_3864	0.21	-1.5
4,036,596	-		Psest_3864	0.65	-0.3
4,036,694	+		Psest_3864	0.80	+0.4
4,036,694	+		Psest_3864	0.80	+0.2
4,036,694	+		Psest_3864	0.80	+0.3
4,036,694	+		Psest_3864	0.80	+0.4
4,036,694	+		Psest_3864	0.80	+0.3
4,036,694	+		Psest_3864	0.80	-0.9
4,036,694	+		Psest_3864	0.80	+0.5
4,036,694	+		Psest_3864	0.80	+0.6
4,036,694	+		Psest_3864	0.80	+0.9
4,036,694	+		Psest_3864	0.80	+0.6
4,036,694	+		Psest_3864	0.80	-0.1
4,036,694	+		Psest_3864	0.80	-0.4
4,036,694	+		Psest_3864	0.80	-1.5
4,036,695	-		Psest_3864	0.80	+0.5
4,036,695	-		Psest_3864	0.80	-0.1
4,036,695	-		Psest_3864	0.80	-0.2
4,036,695	-		Psest_3864	0.80	-0.3
4,036,695	-		Psest_3864	0.80	-1.5
4,036,695	-		Psest_3864	0.80	-0.3
4,036,695	-		Psest_3864	0.80	-2.4
4,036,695	-		Psest_3864	0.80	+0.1
4,036,695	-		Psest_3864	0.80	+0.8
4,036,695	-		Psest_3864	0.80	-0.5
4,036,695	-		Psest_3864	0.80	-1.6
4,036,695	-		Psest_3864	0.80	-0.5
4,036,700	+		Psest_3864	0.81	+0.5
4,036,700	+		Psest_3864	0.81	+2.8
4,036,700	+		Psest_3864	0.81	-1.7
4,036,700	+		Psest_3864	0.81	-0.5
4,036,700	+		Psest_3864	0.81	-1.0
4,036,700	+		Psest_3864	0.81	-0.2
4,036,700	+		Psest_3864	0.81	+1.0
4,036,700	+		Psest_3864	0.81	+2.3
4,036,700	+		Psest_3864	0.81	-0.4
4,036,700	+		Psest_3864	0.81	-1.3
4,036,701	-		Psest_3864	0.81	-0.6
4,036,701	-		Psest_3864	0.81	+1.2
4,036,701	-		Psest_3864	0.81	+0.2
4,036,701	-		Psest_3864	0.81	-1.1
4,036,923	+		Psest_3865	0.15	-0.5
4,036,923	+		Psest_3865	0.15	-0.9
4,036,924	-		Psest_3865	0.15	+0.1
4,036,924	-		Psest_3865	0.15	+0.2
4,036,924	-		Psest_3865	0.15	-0.9
4,036,924	-		Psest_3865	0.15	-0.6
4,036,928	-		Psest_3865	0.16	-1.5
4,036,937	-		Psest_3865	0.18	-1.3
4,036,937	-		Psest_3865	0.18	-0.8
4,037,268	-				-0.2
4,037,268	-				-2.0
4,037,278	-				-0.2
4,037,278	-				+1.5
4,037,278	-				-1.2
4,037,278	-				+1.8
4,037,278	-				-0.8
4,037,299	+				+0.2
4,037,299	+				+1.9
4,037,299	+				+1.6
4,037,300	-				+0.4
4,037,300	-				-1.3
4,037,300	-				+0.6
4,037,327	+				+3.4
4,037,327	+				+2.3
4,037,327	+				-1.5
4,037,328	-				+0.7
4,037,328	-				-0.0
4,037,328	-				-1.0
4,037,428	+				-1.4
4,037,742	-		Psest_3866	0.29	-0.9
4,037,957	+		Psest_3866	0.43	+1.4
4,037,957	+		Psest_3866	0.43	+0.6
4,037,957	+		Psest_3866	0.43	-1.3
4,037,957	+		Psest_3866	0.43	-1.1
4,037,957	+		Psest_3866	0.43	-3.4
4,037,958	-		Psest_3866	0.43	+0.7
4,037,958	-		Psest_3866	0.43	+1.1
4,038,020	+		Psest_3866	0.47	-0.9
4,038,020	+		Psest_3866	0.47	+0.5
4,038,020	+		Psest_3866	0.47	+2.2
4,038,020	+		Psest_3866	0.47	-1.8
4,038,021	-		Psest_3866	0.47	+0.2
4,038,024	+		Psest_3866	0.47	+0.3
4,038,024	+		Psest_3866	0.47	-0.9
4,038,024	+		Psest_3866	0.47	+1.1
4,038,024	+		Psest_3866	0.47	-1.8
4,038,025	-		Psest_3866	0.47	-2.7
4,038,025	-		Psest_3866	0.47	-1.1
4,038,025	-		Psest_3866	0.47	-1.1
4,038,080	+		Psest_3866	0.51	+1.7
4,038,080	+		Psest_3866	0.51	-0.2
4,038,080	+		Psest_3866	0.51	-0.3
4,038,080	+		Psest_3866	0.51	+1.9
4,038,081	-		Psest_3866	0.51	+0.8
4,038,081	-		Psest_3866	0.51	-1.8
4,038,248	+		Psest_3866	0.62	+2.5
4,038,248	+		Psest_3866	0.62	+0.1
4,038,248	+		Psest_3866	0.62	+0.7
4,038,248	+		Psest_3866	0.62	+0.8
4,038,249	-		Psest_3866	0.62	+1.2
4,038,249	-		Psest_3866	0.62	+2.8
4,038,249	-		Psest_3866	0.62	+0.7
4,038,249	-		Psest_3866	0.62	+0.2
4,038,249	-		Psest_3866	0.62	+1.2
4,038,249	-		Psest_3866	0.62	+1.4
4,038,249	-		Psest_3866	0.62	-1.6
4,038,249	-		Psest_3866	0.62	+1.2
4,038,249	-		Psest_3866	0.62	-2.5
4,038,249	-		Psest_3866	0.62	-0.2
4,038,249	-		Psest_3866	0.62	+1.3
4,038,257	+		Psest_3866	0.63	+2.6