Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1183

Experiment: Doxycycline hyclate 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0002 mg/ml
1,285,207	-				+1.0
1,285,272	-				-0.5
1,285,479	-		Psest_1182	0.21	+2.6
1,285,604	-		Psest_1182	0.35	+2.6
1,285,742	+		Psest_1182	0.50	-1.3
1,285,742	+		Psest_1182	0.50	-0.0
1,285,742	+		Psest_1182	0.50	-3.3
1,285,742	+		Psest_1182	0.50	-0.5
1,285,742	+		Psest_1182	0.50	-1.3
1,285,743	-		Psest_1182	0.50	-0.4
1,285,743	-		Psest_1182	0.50	-0.6
1,285,743	-		Psest_1182	0.50	-0.3
1,285,743	-		Psest_1182	0.50	-0.6
1,285,743	-		Psest_1182	0.50	-1.2
1,285,743	-		Psest_1182	0.50	+0.4
1,286,067	-		Psest_1182	0.86	-1.0
1,286,067	-		Psest_1182	0.86	-1.6
1,286,081	+		Psest_1182	0.87	+1.7
1,286,115	-				+0.5
1,286,162	+				-0.9
1,286,162	+				+2.1
1,286,162	+				+0.7
1,286,162	+				+0.3
1,286,162	+				+0.7
1,286,162	+				-0.9
1,286,163	-				-0.7
1,286,163	-				+1.4
1,286,163	-				-0.6
1,286,163	-				+1.7
1,286,361	-		Psest_1183	0.39	+0.8
1,286,364	+		Psest_1183	0.40	-1.4
1,286,365	-		Psest_1183	0.40	-1.9
1,286,365	-		Psest_1183	0.40	-1.5
1,286,599	+				+0.8
1,286,599	+				+0.5
1,286,600	-				-1.6
1,286,600	-				+0.5
1,287,089	+		Psest_1184	0.86	+0.4
1,287,089	+		Psest_1184	0.86	+0.6
1,287,089	+		Psest_1184	0.86	+1.2
1,287,089	+		Psest_1184	0.86	+1.6
1,287,089	+		Psest_1184	0.86	+2.1
1,287,089	+		Psest_1184	0.86	+3.5
1,287,089	+		Psest_1184	0.86	-2.6
1,287,089	+		Psest_1184	0.86	-0.9
1,287,090	-		Psest_1184	0.86	+2.2
1,287,090	-		Psest_1184	0.86	+1.0
1,287,090	-		Psest_1184	0.86	+2.5
1,287,206	+				-1.0
1,287,206	+				-1.1
1,287,207	-				-0.7
1,287,216	+				-0.6
1,287,216	+				+0.1
1,287,217	-				-1.8
1,287,248	+				-1.3
1,287,248	+				-1.0
1,287,248	+				-1.5
1,287,248	+				-1.9
1,287,248	+				-0.0
1,287,248	+				-1.1
1,287,248	+				+0.5
1,287,248	+				-0.7
1,287,248	+				+0.8
1,287,248	+				+0.2
1,287,249	-				-0.3
1,287,249	-				+0.4
1,287,249	-				+0.6
1,287,315	+				-1.0
1,287,315	+				-1.1
1,287,384	+		Psest_1185	0.16	+0.5
1,287,384	+		Psest_1185	0.16	+0.7
1,287,385	-		Psest_1185	0.17	-1.5
1,287,461	-		Psest_1185	0.28	+0.0