Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0791

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0789 and Psest_0790 are separated by 68 nucleotidesPsest_0790 and Psest_0791 are separated by 166 nucleotidesPsest_0791 and Psest_0792 are separated by 275 nucleotides Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734 _0789 Psest_0790: Psest_0790 - Uncharacterized protein conserved in bacteria, at 862,803 to 863,243 _0790 Psest_0791: Psest_0791 - Acyl-CoA dehydrogenases, at 863,410 to 864,660 _0791 Psest_0792: Psest_0792 - Regulator of nitric oxide reductase transcription, at 864,936 to 867,113 _0792 Position (kb) 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 862.431 kb on + strand, within Psest_0789at 862.432 kb on - strand, within Psest_0789at 862.432 kb on - strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.619 kb on - strand, within Psest_0789at 862.625 kb on + strand, within Psest_0789at 862.626 kb on - strand, within Psest_0789at 862.810 kb on - strandat 862.989 kb on + strand, within Psest_0790at 863.083 kb on + strand, within Psest_0790at 863.083 kb on + strand, within Psest_0790at 863.084 kb on - strand, within Psest_0790at 863.229 kb on + strandat 863.229 kb on + strandat 863.229 kb on + strandat 863.229 kb on + strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.370 kb on + strandat 863.371 kb on - strandat 863.422 kb on + strandat 863.527 kb on + strandat 863.887 kb on + strand, within Psest_0791at 863.888 kb on - strand, within Psest_0791at 864.277 kb on + strand, within Psest_0791at 864.277 kb on + strand, within Psest_0791at 864.277 kb on + strand, within Psest_0791at 864.277 kb on + strand, within Psest_0791at 864.277 kb on + strand, within Psest_0791at 864.277 kb on + strand, within Psest_0791at 864.277 kb on + strand, within Psest_0791at 864.278 kb on - strand, within Psest_0791at 864.278 kb on - strand, within Psest_0791at 864.289 kb on + strand, within Psest_0791at 864.475 kb on + strand, within Psest_0791at 864.475 kb on + strand, within Psest_0791at 864.634 kb on + strandat 864.634 kb on + strandat 864.638 kb on + strandat 864.639 kb on - strandat 864.639 kb on - strandat 864.639 kb on - strandat 864.639 kb on - strandat 864.639 kb on - strandat 864.775 kb on + strandat 864.775 kb on + strandat 864.776 kb on - strandat 864.776 kb on - strandat 864.776 kb on - strandat 864.776 kb on - strandat 864.776 kb on - strandat 864.787 kb on + strandat 864.787 kb on + strandat 864.788 kb on - strandat 864.896 kb on + strandat 864.896 kb on + strandat 864.896 kb on + strandat 864.896 kb on + strandat 864.896 kb on + strandat 864.896 kb on + strandat 864.897 kb on - strandat 864.897 kb on - strandat 864.897 kb on - strandat 864.897 kb on - strandat 864.897 kb on - strandat 864.897 kb on - strandat 864.925 kb on + strandat 864.925 kb on + strandat 864.925 kb on + strandat 864.926 kb on - strandat 864.990 kb on - strandat 865.048 kb on - strandat 865.117 kb on - strandat 865.158 kb on + strand, within Psest_0792at 865.197 kb on + strand, within Psest_0792at 865.198 kb on - strand, within Psest_0792at 865.260 kb on + strand, within Psest_0792at 865.260 kb on + strand, within Psest_0792at 865.260 kb on + strand, within Psest_0792at 865.260 kb on + strand, within Psest_0792at 865.261 kb on - strand, within Psest_0792at 865.261 kb on - strand, within Psest_0792at 865.261 kb on - strand, within Psest_0792at 865.261 kb on - strand, within Psest_0792at 865.261 kb on - strand, within Psest_0792at 865.335 kb on + strand, within Psest_0792at 865.335 kb on + strand, within Psest_0792at 865.335 kb on + strand, within Psest_0792at 865.335 kb on + strand, within Psest_0792at 865.335 kb on + strand, within Psest_0792at 865.335 kb on + strand, within Psest_0792at 865.335 kb on + strand, within Psest_0792at 865.336 kb on - strand, within Psest_0792

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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862,431 + Psest_0789 0.14 -0.9
862,432 - Psest_0789 0.14 +1.3
862,432 - Psest_0789 0.14 +2.3
862,618 + Psest_0789 0.67 -0.4
862,618 + Psest_0789 0.67 -3.0
862,618 + Psest_0789 0.67 +0.7
862,618 + Psest_0789 0.67 -0.7
862,618 + Psest_0789 0.67 +0.7
862,618 + Psest_0789 0.67 -0.7
862,619 - Psest_0789 0.67 -0.6
862,625 + Psest_0789 0.69 -2.1
862,626 - Psest_0789 0.69 -2.7
862,810 - +1.9
862,989 + Psest_0790 0.42 -0.5
863,083 + Psest_0790 0.63 -0.9
863,083 + Psest_0790 0.63 +1.0
863,084 - Psest_0790 0.64 -0.1
863,229 + +2.2
863,229 + +0.8
863,229 + -1.6
863,229 + +0.6
863,230 - -1.7
863,230 - -0.5
863,370 + +0.5
863,371 - +0.6
863,422 + -1.3
863,527 + -0.6
863,887 + Psest_0791 0.38 +0.1
863,888 - Psest_0791 0.38 -0.7
864,277 + Psest_0791 0.69 -1.1
864,277 + Psest_0791 0.69 -0.5
864,277 + Psest_0791 0.69 -1.1
864,277 + Psest_0791 0.69 -0.3
864,277 + Psest_0791 0.69 -0.9
864,277 + Psest_0791 0.69 -0.9
864,277 + Psest_0791 0.69 +0.6
864,278 - Psest_0791 0.69 -1.2
864,278 - Psest_0791 0.69 -2.1
864,289 + Psest_0791 0.70 -0.4
864,475 + Psest_0791 0.85 -2.3
864,475 + Psest_0791 0.85 -1.7
864,634 + -0.0
864,634 + +0.0
864,638 + -1.2
864,639 - -0.9
864,639 - +0.1
864,639 - +0.4
864,639 - -3.5
864,639 - -0.1
864,775 + +2.0
864,775 + +0.3
864,776 - +1.8
864,776 - +0.8
864,776 - +1.2
864,776 - -0.5
864,776 - -0.9
864,787 + +2.2
864,787 + -2.3
864,788 - +0.4
864,896 + -1.9
864,896 + -1.9
864,896 + +0.2
864,896 + +0.7
864,896 + +0.2
864,896 + +0.8
864,897 - -1.7
864,897 - -2.7
864,897 - -1.1
864,897 - -0.1
864,897 - -1.7
864,897 - -0.9
864,925 + +1.0
864,925 + +1.2
864,925 + -0.2
864,926 - +0.1
864,990 - +0.3
865,048 - -0.1
865,117 - +0.6
865,158 + Psest_0792 0.10 -1.7
865,197 + Psest_0792 0.12 +0.5
865,198 - Psest_0792 0.12 -2.5
865,260 + Psest_0792 0.15 -0.2
865,260 + Psest_0792 0.15 -0.9
865,260 + Psest_0792 0.15 +0.3
865,260 + Psest_0792 0.15 +1.5
865,261 - Psest_0792 0.15 +1.8
865,261 - Psest_0792 0.15 -1.7
865,261 - Psest_0792 0.15 -0.4
865,261 - Psest_0792 0.15 +0.4
865,261 - Psest_0792 0.15 +1.7
865,335 + Psest_0792 0.18 +1.4
865,335 + Psest_0792 0.18 -1.0
865,335 + Psest_0792 0.18 +2.3
865,335 + Psest_0792 0.18 +1.2
865,335 + Psest_0792 0.18 -1.1
865,335 + Psest_0792 0.18 +1.2
865,335 + Psest_0792 0.18 -1.6
865,336 - Psest_0792 0.18 +0.1

Or see this region's nucleotide sequence