Experiment: Benzethonium chloride 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4195 and Psest_4196 are separated by 3 nucleotides Psest_4196 and Psest_4197 overlap by 4 nucleotides Psest_4197 and Psest_4198 overlap by 4 nucleotides Psest_4198 and Psest_4199 overlap by 4 nucleotides Psest_4199 and Psest_4200 are separated by 3 nucleotides
Psest_4195: Psest_4195 - general secretion pathway protein L, at 4,373,801 to 4,374,934
_4195
Psest_4196: Psest_4196 - Type II secretory pathway, component PulK, at 4,374,938 to 4,375,927
_4196
Psest_4197: Psest_4197 - general secretion pathway protein J, at 4,375,924 to 4,376,637
_4197
Psest_4198: Psest_4198 - general secretion pathway protein I, at 4,376,634 to 4,377,053
_4198
Psest_4199: Psest_4199 - general secretion pathway protein H, at 4,377,050 to 4,377,619
_4199
Psest_4200: Psest_4200 - general secretion pathway protein G, at 4,377,623 to 4,378,063
_4200
Position (kb)
4375
4376
4377 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4374.939 kb on + strand at 4375.126 kb on + strand, within Psest_4196 at 4375.305 kb on + strand, within Psest_4196 at 4375.306 kb on - strand, within Psest_4196 at 4375.549 kb on + strand, within Psest_4196 at 4375.549 kb on + strand, within Psest_4196 at 4376.028 kb on + strand, within Psest_4197 at 4376.029 kb on - strand, within Psest_4197 at 4376.247 kb on - strand, within Psest_4197 at 4376.434 kb on + strand, within Psest_4197 at 4376.435 kb on - strand, within Psest_4197 at 4376.435 kb on - strand, within Psest_4197 at 4376.546 kb on + strand, within Psest_4197 at 4376.547 kb on - strand, within Psest_4197 at 4377.001 kb on - strand, within Psest_4198 at 4377.185 kb on + strand, within Psest_4199 at 4377.185 kb on + strand, within Psest_4199 at 4377.185 kb on + strand, within Psest_4199 at 4377.185 kb on + strand, within Psest_4199 at 4377.185 kb on + strand, within Psest_4199 at 4377.186 kb on - strand, within Psest_4199 at 4377.186 kb on - strand, within Psest_4199 at 4377.186 kb on - strand, within Psest_4199 at 4377.186 kb on - strand, within Psest_4199 at 4377.186 kb on - strand, within Psest_4199 at 4377.278 kb on + strand, within Psest_4199 at 4377.278 kb on + strand, within Psest_4199 at 4377.278 kb on + strand, within Psest_4199 at 4377.279 kb on - strand, within Psest_4199 at 4377.279 kb on - strand, within Psest_4199 at 4377.279 kb on - strand, within Psest_4199
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM remove 4,374,939 + +0.9 4,374,939 + +2.1 4,374,939 + +0.5 4,374,939 + +1.2 4,374,939 + -0.5 4,375,126 + Psest_4196 0.19 -2.0 4,375,305 + Psest_4196 0.37 -0.4 4,375,306 - Psest_4196 0.37 +0.4 4,375,549 + Psest_4196 0.62 +0.5 4,375,549 + Psest_4196 0.62 -0.4 4,376,028 + Psest_4197 0.15 -0.3 4,376,029 - Psest_4197 0.15 +2.4 4,376,247 - Psest_4197 0.45 +1.4 4,376,434 + Psest_4197 0.71 +0.6 4,376,435 - Psest_4197 0.72 -0.1 4,376,435 - Psest_4197 0.72 +1.2 4,376,546 + Psest_4197 0.87 +2.7 4,376,547 - Psest_4197 0.87 +0.5 4,377,001 - Psest_4198 0.87 -2.4 4,377,185 + Psest_4199 0.24 +1.4 4,377,185 + Psest_4199 0.24 +3.0 4,377,185 + Psest_4199 0.24 -0.4 4,377,185 + Psest_4199 0.24 -0.9 4,377,185 + Psest_4199 0.24 -2.2 4,377,186 - Psest_4199 0.24 -2.4 4,377,186 - Psest_4199 0.24 +0.5 4,377,186 - Psest_4199 0.24 -2.2 4,377,186 - Psest_4199 0.24 +0.5 4,377,186 - Psest_4199 0.24 -1.2 4,377,278 + Psest_4199 0.40 +1.5 4,377,278 + Psest_4199 0.40 +1.3 4,377,278 + Psest_4199 0.40 +3.8 4,377,279 - Psest_4199 0.40 +0.9 4,377,279 - Psest_4199 0.40 -2.2 4,377,279 - Psest_4199 0.40 -2.7
Or see this region's nucleotide sequence