Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3542

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3541 and Psest_3542 are separated by 22 nucleotidesPsest_3542 and Psest_3543 overlap by 1 nucleotidesPsest_3543 and Psest_3544 overlap by 4 nucleotides Psest_3541: Psest_3541 - Outer membrane cobalamin receptor protein, at 3,721,659 to 3,723,521 _3541 Psest_3542: Psest_3542 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 3,723,544 to 3,724,344 _3542 Psest_3543: Psest_3543 - hypothetical protein, at 3,724,344 to 3,724,751 _3543 Psest_3544: Psest_3544 - GTP cyclohydrolase II, at 3,724,748 to 3,725,365 _3544 Position (kb) 3723 3724 3725Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3722.599 kb on + strand, within Psest_3541at 3722.600 kb on - strand, within Psest_3541at 3722.652 kb on + strand, within Psest_3541at 3722.653 kb on - strand, within Psest_3541at 3722.653 kb on - strand, within Psest_3541at 3722.830 kb on + strand, within Psest_3541at 3722.830 kb on + strand, within Psest_3541at 3722.831 kb on - strand, within Psest_3541at 3722.859 kb on + strand, within Psest_3541at 3722.955 kb on + strand, within Psest_3541at 3722.955 kb on + strand, within Psest_3541at 3722.955 kb on + strand, within Psest_3541at 3722.955 kb on + strand, within Psest_3541at 3722.955 kb on + strand, within Psest_3541at 3722.956 kb on - strand, within Psest_3541at 3722.956 kb on - strand, within Psest_3541at 3722.956 kb on - strand, within Psest_3541at 3723.009 kb on + strand, within Psest_3541at 3723.010 kb on - strand, within Psest_3541at 3723.010 kb on - strand, within Psest_3541at 3723.176 kb on + strand, within Psest_3541at 3723.177 kb on - strand, within Psest_3541at 3723.414 kb on + strandat 3723.415 kb on - strandat 3723.415 kb on - strandat 3723.415 kb on - strandat 3723.415 kb on - strandat 3723.434 kb on + strandat 3723.435 kb on - strandat 3723.435 kb on - strandat 3723.435 kb on - strandat 3723.435 kb on - strandat 3723.435 kb on - strandat 3723.435 kb on - strandat 3723.459 kb on + strandat 3723.459 kb on + strandat 3723.460 kb on - strandat 3723.520 kb on - strandat 3723.843 kb on + strand, within Psest_3542at 3723.844 kb on - strand, within Psest_3542at 3723.845 kb on + strand, within Psest_3542at 3723.845 kb on + strand, within Psest_3542at 3723.845 kb on + strand, within Psest_3542at 3723.845 kb on + strand, within Psest_3542at 3723.845 kb on + strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.846 kb on - strand, within Psest_3542at 3723.869 kb on + strand, within Psest_3542at 3723.869 kb on + strand, within Psest_3542at 3723.869 kb on + strand, within Psest_3542at 3723.870 kb on - strand, within Psest_3542at 3723.895 kb on + strand, within Psest_3542at 3723.895 kb on + strand, within Psest_3542at 3723.895 kb on + strand, within Psest_3542at 3723.895 kb on + strand, within Psest_3542at 3723.895 kb on + strand, within Psest_3542at 3723.895 kb on + strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.896 kb on - strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.899 kb on + strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3723.900 kb on - strand, within Psest_3542at 3724.276 kb on + strandat 3724.330 kb on + strandat 3724.398 kb on + strand, within Psest_3543at 3724.399 kb on - strand, within Psest_3543at 3724.701 kb on - strand, within Psest_3543at 3724.701 kb on - strand, within Psest_3543at 3724.701 kb on - strand, within Psest_3543

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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3,722,599 + Psest_3541 0.50 -1.4
3,722,600 - Psest_3541 0.51 -2.0
3,722,652 + Psest_3541 0.53 +1.8
3,722,653 - Psest_3541 0.53 -1.4
3,722,653 - Psest_3541 0.53 +1.5
3,722,830 + Psest_3541 0.63 +3.0
3,722,830 + Psest_3541 0.63 +1.0
3,722,831 - Psest_3541 0.63 -0.7
3,722,859 + Psest_3541 0.64 -0.9
3,722,955 + Psest_3541 0.70 +0.8
3,722,955 + Psest_3541 0.70 +1.4
3,722,955 + Psest_3541 0.70 -0.7
3,722,955 + Psest_3541 0.70 -0.2
3,722,955 + Psest_3541 0.70 -0.1
3,722,956 - Psest_3541 0.70 +1.1
3,722,956 - Psest_3541 0.70 +1.0
3,722,956 - Psest_3541 0.70 -1.4
3,723,009 + Psest_3541 0.72 -0.7
3,723,010 - Psest_3541 0.73 +0.8
3,723,010 - Psest_3541 0.73 +1.1
3,723,176 + Psest_3541 0.81 +1.1
3,723,177 - Psest_3541 0.81 +0.9
3,723,414 + +0.1
3,723,415 - +0.8
3,723,415 - -0.4
3,723,415 - +1.9
3,723,415 - +1.3
3,723,434 + -1.3
3,723,435 - +0.5
3,723,435 - +0.9
3,723,435 - +1.5
3,723,435 - +2.9
3,723,435 - -1.0
3,723,435 - -1.2
3,723,459 + -0.8
3,723,459 + +1.9
3,723,460 - -0.2
3,723,520 - -2.3
3,723,843 + Psest_3542 0.37 +0.2
3,723,844 - Psest_3542 0.37 -0.6
3,723,845 + Psest_3542 0.38 -1.8
3,723,845 + Psest_3542 0.38 -2.8
3,723,845 + Psest_3542 0.38 -0.8
3,723,845 + Psest_3542 0.38 -0.6
3,723,845 + Psest_3542 0.38 -0.2
3,723,846 - Psest_3542 0.38 -2.2
3,723,846 - Psest_3542 0.38 +1.5
3,723,846 - Psest_3542 0.38 +0.6
3,723,846 - Psest_3542 0.38 +0.4
3,723,846 - Psest_3542 0.38 -1.4
3,723,846 - Psest_3542 0.38 -0.4
3,723,846 - Psest_3542 0.38 +2.2
3,723,846 - Psest_3542 0.38 -0.5
3,723,846 - Psest_3542 0.38 -1.0
3,723,846 - Psest_3542 0.38 +1.3
3,723,869 + Psest_3542 0.41 -1.9
3,723,869 + Psest_3542 0.41 +0.1
3,723,869 + Psest_3542 0.41 +0.8
3,723,870 - Psest_3542 0.41 -1.2
3,723,895 + Psest_3542 0.44 -1.9
3,723,895 + Psest_3542 0.44 -0.9
3,723,895 + Psest_3542 0.44 +1.3
3,723,895 + Psest_3542 0.44 -0.9
3,723,895 + Psest_3542 0.44 -1.4
3,723,895 + Psest_3542 0.44 -2.1
3,723,896 - Psest_3542 0.44 +0.3
3,723,896 - Psest_3542 0.44 -0.8
3,723,896 - Psest_3542 0.44 +1.0
3,723,896 - Psest_3542 0.44 -0.6
3,723,896 - Psest_3542 0.44 -0.6
3,723,896 - Psest_3542 0.44 -0.8
3,723,896 - Psest_3542 0.44 -0.6
3,723,896 - Psest_3542 0.44 -0.1
3,723,896 - Psest_3542 0.44 -1.6
3,723,896 - Psest_3542 0.44 -2.8
3,723,896 - Psest_3542 0.44 -0.9
3,723,899 + Psest_3542 0.44 +2.5
3,723,899 + Psest_3542 0.44 -0.4
3,723,899 + Psest_3542 0.44 -0.0
3,723,899 + Psest_3542 0.44 -0.9
3,723,899 + Psest_3542 0.44 -1.8
3,723,899 + Psest_3542 0.44 +0.1
3,723,899 + Psest_3542 0.44 -1.5
3,723,899 + Psest_3542 0.44 +0.9
3,723,899 + Psest_3542 0.44 -0.5
3,723,899 + Psest_3542 0.44 +2.1
3,723,899 + Psest_3542 0.44 +0.4
3,723,899 + Psest_3542 0.44 +2.4
3,723,899 + Psest_3542 0.44 +4.2
3,723,899 + Psest_3542 0.44 -1.3
3,723,900 - Psest_3542 0.44 -1.4
3,723,900 - Psest_3542 0.44 -0.2
3,723,900 - Psest_3542 0.44 -2.6
3,723,900 - Psest_3542 0.44 +0.4
3,723,900 - Psest_3542 0.44 -0.8
3,723,900 - Psest_3542 0.44 -0.4
3,723,900 - Psest_3542 0.44 -1.3
3,723,900 - Psest_3542 0.44 -1.1
3,723,900 - Psest_3542 0.44 -1.0
3,723,900 - Psest_3542 0.44 -0.1
3,723,900 - Psest_3542 0.44 -1.2
3,723,900 - Psest_3542 0.44 +2.3
3,723,900 - Psest_3542 0.44 +0.6
3,723,900 - Psest_3542 0.44 +1.9
3,724,276 + +0.4
3,724,330 + -0.5
3,724,398 + Psest_3543 0.13 -1.2
3,724,399 - Psest_3543 0.13 -1.8
3,724,701 - Psest_3543 0.88 +2.5
3,724,701 - Psest_3543 0.88 -1.0
3,724,701 - Psest_3543 0.88 +0.5

Or see this region's nucleotide sequence