Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3501

Experiment: Benzethonium chloride 0.01 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3499 and Psest_3500 are separated by 74 nucleotidesPsest_3500 and Psest_3501 are separated by 71 nucleotidesPsest_3501 and Psest_3502 are separated by 53 nucleotides Psest_3499: Psest_3499 - acyl-CoA thioesterase II, at 3,671,272 to 3,672,141 _3499 Psest_3500: Psest_3500 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 3,672,216 to 3,672,770 _3500 Psest_3501: Psest_3501 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 3,672,842 to 3,673,762 _3501 Psest_3502: Psest_3502 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 3,673,816 to 3,675,048 _3502 Position (kb) 3672 3673 3674Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3671.916 kb on - strand, within Psest_3499at 3671.955 kb on - strand, within Psest_3499at 3672.131 kb on - strandat 3672.131 kb on - strandat 3672.131 kb on - strandat 3672.217 kb on + strandat 3672.218 kb on - strandat 3672.218 kb on - strandat 3672.420 kb on + strand, within Psest_3500at 3672.420 kb on + strand, within Psest_3500at 3672.420 kb on + strand, within Psest_3500at 3672.420 kb on + strand, within Psest_3500at 3672.421 kb on - strand, within Psest_3500at 3672.421 kb on - strand, within Psest_3500at 3672.421 kb on - strand, within Psest_3500at 3672.421 kb on - strand, within Psest_3500at 3672.661 kb on + strand, within Psest_3500at 3672.808 kb on - strandat 3672.808 kb on - strandat 3672.808 kb on - strandat 3672.808 kb on - strandat 3672.872 kb on + strandat 3672.872 kb on + strandat 3672.873 kb on - strandat 3672.873 kb on - strandat 3672.873 kb on - strandat 3672.973 kb on - strand, within Psest_3501at 3672.988 kb on - strand, within Psest_3501at 3673.029 kb on - strand, within Psest_3501at 3673.029 kb on - strand, within Psest_3501at 3673.029 kb on - strand, within Psest_3501at 3673.029 kb on - strand, within Psest_3501at 3673.040 kb on + strand, within Psest_3501at 3673.041 kb on - strand, within Psest_3501at 3673.114 kb on + strand, within Psest_3501at 3673.115 kb on - strand, within Psest_3501at 3673.265 kb on + strand, within Psest_3501at 3673.265 kb on + strand, within Psest_3501at 3673.265 kb on + strand, within Psest_3501at 3673.266 kb on - strand, within Psest_3501at 3673.266 kb on - strand, within Psest_3501at 3673.266 kb on - strand, within Psest_3501at 3673.266 kb on - strand, within Psest_3501at 3673.429 kb on + strand, within Psest_3501at 3673.429 kb on + strand, within Psest_3501at 3673.464 kb on - strand, within Psest_3501at 3673.464 kb on - strand, within Psest_3501at 3673.493 kb on + strand, within Psest_3501at 3673.493 kb on + strand, within Psest_3501at 3673.494 kb on - strand, within Psest_3501at 3673.494 kb on - strand, within Psest_3501at 3673.494 kb on - strand, within Psest_3501at 3673.494 kb on - strand, within Psest_3501at 3673.508 kb on + strand, within Psest_3501at 3673.508 kb on + strand, within Psest_3501at 3673.778 kb on + strandat 3673.922 kb on - strandat 3673.999 kb on + strand, within Psest_3502at 3674.260 kb on - strand, within Psest_3502at 3674.563 kb on + strand, within Psest_3502at 3674.563 kb on + strand, within Psest_3502at 3674.564 kb on - strandat 3674.651 kb on + strand, within Psest_3502at 3674.652 kb on - strand, within Psest_3502

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
remove
3,671,916 - Psest_3499 0.74 +0.6
3,671,955 - Psest_3499 0.79 -1.7
3,672,131 - -1.2
3,672,131 - +1.3
3,672,131 - +0.7
3,672,217 + -0.4
3,672,218 - +0.8
3,672,218 - -0.5
3,672,420 + Psest_3500 0.37 +0.4
3,672,420 + Psest_3500 0.37 +1.9
3,672,420 + Psest_3500 0.37 -2.6
3,672,420 + Psest_3500 0.37 -1.8
3,672,421 - Psest_3500 0.37 -0.8
3,672,421 - Psest_3500 0.37 -0.5
3,672,421 - Psest_3500 0.37 +0.1
3,672,421 - Psest_3500 0.37 -1.1
3,672,661 + Psest_3500 0.80 -0.2
3,672,808 - -0.8
3,672,808 - -0.9
3,672,808 - -0.3
3,672,808 - -2.4
3,672,872 + +0.3
3,672,872 + +1.2
3,672,873 - -1.4
3,672,873 - +2.0
3,672,873 - +0.4
3,672,973 - Psest_3501 0.14 -0.3
3,672,988 - Psest_3501 0.16 +0.0
3,673,029 - Psest_3501 0.20 -1.6
3,673,029 - Psest_3501 0.20 -0.6
3,673,029 - Psest_3501 0.20 +0.0
3,673,029 - Psest_3501 0.20 +2.7
3,673,040 + Psest_3501 0.21 +0.2
3,673,041 - Psest_3501 0.22 -2.7
3,673,114 + Psest_3501 0.30 +0.1
3,673,115 - Psest_3501 0.30 -2.2
3,673,265 + Psest_3501 0.46 +0.5
3,673,265 + Psest_3501 0.46 -1.3
3,673,265 + Psest_3501 0.46 +0.8
3,673,266 - Psest_3501 0.46 +0.7
3,673,266 - Psest_3501 0.46 +2.3
3,673,266 - Psest_3501 0.46 +1.7
3,673,266 - Psest_3501 0.46 +0.4
3,673,429 + Psest_3501 0.64 +2.2
3,673,429 + Psest_3501 0.64 -1.5
3,673,464 - Psest_3501 0.68 -1.0
3,673,464 - Psest_3501 0.68 -0.3
3,673,493 + Psest_3501 0.71 +0.4
3,673,493 + Psest_3501 0.71 -0.9
3,673,494 - Psest_3501 0.71 +1.4
3,673,494 - Psest_3501 0.71 +4.6
3,673,494 - Psest_3501 0.71 +0.7
3,673,494 - Psest_3501 0.71 +1.6
3,673,508 + Psest_3501 0.72 -2.2
3,673,508 + Psest_3501 0.72 +0.8
3,673,778 + -1.5
3,673,922 - -0.7
3,673,999 + Psest_3502 0.15 +2.9
3,674,260 - Psest_3502 0.36 -0.2
3,674,563 + Psest_3502 0.61 +1.2
3,674,563 + Psest_3502 0.61 -0.5
3,674,564 - -0.2
3,674,651 + Psest_3502 0.68 -3.1
3,674,652 - Psest_3502 0.68 -0.4

Or see this region's nucleotide sequence