Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3242

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3241 and Psest_3242 are separated by 503 nucleotidesPsest_3242 and Psest_3243 are separated by 72 nucleotides Psest_3241: Psest_3241 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 3,412,231 to 3,413,142 _3241 Psest_3242: Psest_3242 - hypothetical protein, at 3,413,646 to 3,413,768 _3242 Psest_3243: Psest_3243 - TIGR00730 family protein, at 3,413,841 to 3,414,428 _3243 Position (kb) 3413 3414Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3412.653 kb on - strand, within Psest_3241at 3412.676 kb on + strand, within Psest_3241at 3412.677 kb on - strand, within Psest_3241at 3412.677 kb on - strand, within Psest_3241at 3412.677 kb on - strand, within Psest_3241at 3412.680 kb on + strand, within Psest_3241at 3412.705 kb on + strand, within Psest_3241at 3412.715 kb on + strand, within Psest_3241at 3412.715 kb on + strand, within Psest_3241at 3412.715 kb on + strand, within Psest_3241at 3412.715 kb on + strand, within Psest_3241at 3412.716 kb on - strand, within Psest_3241at 3412.716 kb on - strand, within Psest_3241at 3412.732 kb on - strand, within Psest_3241at 3412.732 kb on - strand, within Psest_3241at 3412.760 kb on + strand, within Psest_3241at 3412.760 kb on + strand, within Psest_3241at 3412.760 kb on + strand, within Psest_3241at 3412.761 kb on - strand, within Psest_3241at 3412.761 kb on - strand, within Psest_3241at 3412.761 kb on - strand, within Psest_3241at 3412.761 kb on - strand, within Psest_3241at 3412.761 kb on - strand, within Psest_3241at 3412.874 kb on + strand, within Psest_3241at 3412.875 kb on - strand, within Psest_3241at 3413.110 kb on + strandat 3413.110 kb on + strandat 3413.110 kb on + strandat 3413.111 kb on - strandat 3413.243 kb on - strandat 3413.243 kb on - strandat 3413.448 kb on - strandat 3413.448 kb on - strandat 3413.597 kb on + strandat 3413.608 kb on + strandat 3413.630 kb on + strandat 3413.631 kb on - strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.645 kb on + strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.646 kb on - strandat 3413.657 kb on - strandat 3413.703 kb on - strand, within Psest_3242at 3413.730 kb on + strand, within Psest_3242at 3413.730 kb on + strand, within Psest_3242at 3413.730 kb on + strand, within Psest_3242at 3413.730 kb on + strand, within Psest_3242at 3413.731 kb on - strand, within Psest_3242at 3413.731 kb on - strand, within Psest_3242at 3413.731 kb on - strand, within Psest_3242at 3413.731 kb on - strand, within Psest_3242at 3413.731 kb on - strand, within Psest_3242at 3413.731 kb on - strand, within Psest_3242at 3413.836 kb on - strandat 3413.898 kb on + strandat 3413.898 kb on + strandat 3413.899 kb on - strandat 3413.899 kb on - strandat 3413.959 kb on - strand, within Psest_3243at 3414.097 kb on + strand, within Psest_3243at 3414.097 kb on + strand, within Psest_3243at 3414.097 kb on + strand, within Psest_3243at 3414.097 kb on + strand, within Psest_3243at 3414.097 kb on + strand, within Psest_3243at 3414.097 kb on + strand, within Psest_3243at 3414.097 kb on + strand, within Psest_3243at 3414.098 kb on - strand, within Psest_3243at 3414.098 kb on - strand, within Psest_3243at 3414.098 kb on - strand, within Psest_3243at 3414.262 kb on - strand, within Psest_3243at 3414.262 kb on - strand, within Psest_3243at 3414.264 kb on - strand, within Psest_3243at 3414.324 kb on - strand, within Psest_3243at 3414.324 kb on - strand, within Psest_3243at 3414.324 kb on - strand, within Psest_3243at 3414.324 kb on - strand, within Psest_3243at 3414.427 kb on - strandat 3414.474 kb on + strandat 3414.518 kb on - strandat 3414.645 kb on - strandat 3414.645 kb on - strandat 3414.659 kb on + strandat 3414.671 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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3,412,653 - Psest_3241 0.46 -0.5
3,412,676 + Psest_3241 0.49 -1.3
3,412,677 - Psest_3241 0.49 -2.0
3,412,677 - Psest_3241 0.49 -2.0
3,412,677 - Psest_3241 0.49 +1.7
3,412,680 + Psest_3241 0.49 +0.2
3,412,705 + Psest_3241 0.52 +2.1
3,412,715 + Psest_3241 0.53 -0.9
3,412,715 + Psest_3241 0.53 -0.5
3,412,715 + Psest_3241 0.53 -0.2
3,412,715 + Psest_3241 0.53 +0.8
3,412,716 - Psest_3241 0.53 +0.6
3,412,716 - Psest_3241 0.53 -2.8
3,412,732 - Psest_3241 0.55 +1.3
3,412,732 - Psest_3241 0.55 +1.0
3,412,760 + Psest_3241 0.58 +0.5
3,412,760 + Psest_3241 0.58 +3.5
3,412,760 + Psest_3241 0.58 +1.1
3,412,761 - Psest_3241 0.58 +0.2
3,412,761 - Psest_3241 0.58 +0.5
3,412,761 - Psest_3241 0.58 +1.1
3,412,761 - Psest_3241 0.58 -0.6
3,412,761 - Psest_3241 0.58 -1.4
3,412,874 + Psest_3241 0.71 +0.7
3,412,875 - Psest_3241 0.71 -0.6
3,413,110 + -2.4
3,413,110 + +0.2
3,413,110 + +0.3
3,413,111 - -2.3
3,413,243 - -1.4
3,413,243 - +1.6
3,413,448 - +0.5
3,413,448 - -3.5
3,413,597 + -2.1
3,413,608 + -1.5
3,413,630 + -2.9
3,413,631 - +0.6
3,413,645 + -0.4
3,413,645 + -1.5
3,413,645 + -2.5
3,413,645 + +0.8
3,413,645 + -1.5
3,413,645 + -0.3
3,413,645 + -1.0
3,413,645 + -0.3
3,413,645 + +2.9
3,413,645 + +0.0
3,413,645 + +0.0
3,413,645 + -1.5
3,413,645 + -0.1
3,413,645 + -0.9
3,413,646 - -1.4
3,413,646 - +1.5
3,413,646 - -1.0
3,413,646 - +1.9
3,413,646 - -0.4
3,413,646 - +0.2
3,413,646 - +0.8
3,413,646 - +1.4
3,413,646 - -0.7
3,413,646 - +1.5
3,413,657 - -0.1
3,413,703 - Psest_3242 0.46 -0.2
3,413,730 + Psest_3242 0.68 -3.9
3,413,730 + Psest_3242 0.68 -1.5
3,413,730 + Psest_3242 0.68 -0.6
3,413,730 + Psest_3242 0.68 +2.3
3,413,731 - Psest_3242 0.69 +0.1
3,413,731 - Psest_3242 0.69 -0.4
3,413,731 - Psest_3242 0.69 -1.4
3,413,731 - Psest_3242 0.69 -2.0
3,413,731 - Psest_3242 0.69 -0.5
3,413,731 - Psest_3242 0.69 +1.2
3,413,836 - -2.0
3,413,898 + +0.2
3,413,898 + -0.1
3,413,899 - -1.2
3,413,899 - +1.4
3,413,959 - Psest_3243 0.20 +0.7
3,414,097 + Psest_3243 0.44 -2.9
3,414,097 + Psest_3243 0.44 -0.3
3,414,097 + Psest_3243 0.44 -1.1
3,414,097 + Psest_3243 0.44 +0.9
3,414,097 + Psest_3243 0.44 -0.5
3,414,097 + Psest_3243 0.44 -0.5
3,414,097 + Psest_3243 0.44 -2.5
3,414,098 - Psest_3243 0.44 +0.2
3,414,098 - Psest_3243 0.44 -2.8
3,414,098 - Psest_3243 0.44 -0.5
3,414,262 - Psest_3243 0.72 +0.1
3,414,262 - Psest_3243 0.72 +1.8
3,414,264 - Psest_3243 0.72 +2.4
3,414,324 - Psest_3243 0.82 -2.5
3,414,324 - Psest_3243 0.82 +0.5
3,414,324 - Psest_3243 0.82 -0.4
3,414,324 - Psest_3243 0.82 -1.8
3,414,427 - -1.7
3,414,474 + -0.4
3,414,518 - +0.4
3,414,645 - +2.0
3,414,645 - +2.0
3,414,659 + -1.0
3,414,671 + +0.1

Or see this region's nucleotide sequence