Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3153

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3151 and Psest_3153 are separated by 278 nucleotidesPsest_3153 and Psest_3154 overlap by 10 nucleotides Psest_3151: Psest_3151 - hypothetical protein, at 3,321,918 to 3,322,388 _3151 Psest_3153: Psest_3153 - hypothetical protein, at 3,322,667 to 3,322,885 _3153 Psest_3154: Psest_3154 - hypothetical protein, at 3,322,876 to 3,324,540 _3154 Position (kb) 3322 3323Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3321.675 kb on - strandat 3321.675 kb on - strandat 3321.698 kb on - strandat 3321.932 kb on - strandat 3322.140 kb on + strand, within Psest_3151at 3322.141 kb on - strand, within Psest_3151at 3322.143 kb on - strand, within Psest_3151at 3322.181 kb on + strand, within Psest_3151at 3322.269 kb on + strand, within Psest_3151at 3322.386 kb on + strandat 3323.145 kb on - strand, within Psest_3154at 3323.206 kb on - strand, within Psest_3154at 3323.239 kb on + strand, within Psest_3154at 3323.375 kb on + strand, within Psest_3154at 3323.375 kb on + strand, within Psest_3154at 3323.375 kb on + strand, within Psest_3154at 3323.376 kb on - strand, within Psest_3154at 3323.376 kb on - strand, within Psest_3154at 3323.376 kb on - strand, within Psest_3154at 3323.376 kb on - strand, within Psest_3154at 3323.435 kb on + strand, within Psest_3154at 3323.521 kb on - strand, within Psest_3154at 3323.616 kb on + strand, within Psest_3154at 3323.616 kb on + strand, within Psest_3154at 3323.675 kb on - strand, within Psest_3154at 3323.675 kb on - strand, within Psest_3154at 3323.699 kb on + strand, within Psest_3154at 3323.700 kb on - strand, within Psest_3154at 3323.780 kb on - strand, within Psest_3154at 3323.826 kb on + strand, within Psest_3154at 3323.826 kb on + strand, within Psest_3154at 3323.826 kb on + strand, within Psest_3154at 3323.884 kb on - strand, within Psest_3154

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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3,321,675 - +0.2
3,321,675 - -0.4
3,321,698 - -1.9
3,321,932 - -0.5
3,322,140 + Psest_3151 0.47 -2.3
3,322,141 - Psest_3151 0.47 -1.2
3,322,143 - Psest_3151 0.48 -1.7
3,322,181 + Psest_3151 0.56 -1.5
3,322,269 + Psest_3151 0.75 -1.0
3,322,386 + -0.7
3,323,145 - Psest_3154 0.16 -1.0
3,323,206 - Psest_3154 0.20 +0.9
3,323,239 + Psest_3154 0.22 -2.3
3,323,375 + Psest_3154 0.30 -0.3
3,323,375 + Psest_3154 0.30 +1.0
3,323,375 + Psest_3154 0.30 -1.5
3,323,376 - Psest_3154 0.30 -1.2
3,323,376 - Psest_3154 0.30 +2.0
3,323,376 - Psest_3154 0.30 -0.6
3,323,376 - Psest_3154 0.30 +1.5
3,323,435 + Psest_3154 0.34 -1.8
3,323,521 - Psest_3154 0.39 -1.2
3,323,616 + Psest_3154 0.44 -1.9
3,323,616 + Psest_3154 0.44 -0.2
3,323,675 - Psest_3154 0.48 +1.2
3,323,675 - Psest_3154 0.48 +0.3
3,323,699 + Psest_3154 0.49 -0.1
3,323,700 - Psest_3154 0.49 +2.9
3,323,780 - Psest_3154 0.54 +1.4
3,323,826 + Psest_3154 0.57 -0.6
3,323,826 + Psest_3154 0.57 -2.6
3,323,826 + Psest_3154 0.57 -0.5
3,323,884 - Psest_3154 0.61 -0.7

Or see this region's nucleotide sequence