Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3166

Experiment: nitrite (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite (N)
3,337,971	+				+4.1
3,337,971	+				-1.4
3,337,971	+				+0.3
3,337,972	-				-1.5
3,337,972	-				+1.0
3,337,972	-				-0.5
3,337,972	-				-1.1
3,337,988	+		Psest_3165	0.10	+0.2
3,337,988	+		Psest_3165	0.10	+0.4
3,337,988	+		Psest_3165	0.10	-2.0
3,337,988	+		Psest_3165	0.10	+0.1
3,337,988	+		Psest_3165	0.10	+0.8
3,337,988	+		Psest_3165	0.10	+1.7
3,337,988	+		Psest_3165	0.10	+0.5
3,337,988	+		Psest_3165	0.10	-0.2
3,337,988	+		Psest_3165	0.10	+0.4
3,337,988	+		Psest_3165	0.10	-0.7
3,337,988	+		Psest_3165	0.10	-1.6
3,337,988	+		Psest_3165	0.10	+0.3
3,337,988	+		Psest_3165	0.10	-0.5
3,337,988	+		Psest_3165	0.10	-2.0
3,337,988	+		Psest_3165	0.10	+0.8
3,337,988	+		Psest_3165	0.10	-1.1
3,337,988	+		Psest_3165	0.10	+1.1
3,337,988	+		Psest_3165	0.10	-0.0
3,337,988	+		Psest_3165	0.10	+0.6
3,337,988	+		Psest_3165	0.10	-2.8
3,337,988	+		Psest_3165	0.10	-0.1
3,337,988	+		Psest_3165	0.10	+0.3
3,337,988	+		Psest_3165	0.10	+0.6
3,337,988	+		Psest_3165	0.10	-0.0
3,337,989	-		Psest_3165	0.10	+0.5
3,337,989	-		Psest_3165	0.10	+0.4
3,337,989	-		Psest_3165	0.10	+0.3
3,337,989	-		Psest_3165	0.10	+1.3
3,337,989	-		Psest_3165	0.10	-0.7
3,337,989	-		Psest_3165	0.10	-2.2
3,337,989	-		Psest_3165	0.10	+0.6
3,337,989	-		Psest_3165	0.10	-0.3
3,337,989	-		Psest_3165	0.10	-1.0
3,337,989	-		Psest_3165	0.10	+0.7
3,337,989	-		Psest_3165	0.10	+0.1
3,337,989	-		Psest_3165	0.10	+1.4
3,337,989	-		Psest_3165	0.10	-0.2
3,337,989	-		Psest_3165	0.10	+0.2
3,337,989	-		Psest_3165	0.10	+0.4
3,337,989	-		Psest_3165	0.10	-2.1
3,337,989	-		Psest_3165	0.10	+0.4
3,337,989	-		Psest_3165	0.10	-0.9
3,337,989	-		Psest_3165	0.10	-1.0
3,337,989	-		Psest_3165	0.10	+1.1
3,337,990	+		Psest_3165	0.10	+0.4
3,337,990	+		Psest_3165	0.10	-0.5
3,337,990	+		Psest_3165	0.10	+0.0
3,337,990	+		Psest_3165	0.10	-2.0
3,337,990	+		Psest_3165	0.10	+0.3
3,337,990	+		Psest_3165	0.10	+0.3
3,337,990	+		Psest_3165	0.10	-0.2
3,337,990	+		Psest_3165	0.10	-0.3
3,337,990	+		Psest_3165	0.10	-0.7
3,337,990	+		Psest_3165	0.10	+0.9
3,337,990	+		Psest_3165	0.10	+0.4
3,337,990	+		Psest_3165	0.10	+0.1
3,337,990	+		Psest_3165	0.10	-0.8
3,337,990	+		Psest_3165	0.10	+0.4
3,337,990	+		Psest_3165	0.10	-1.5
3,337,990	+		Psest_3165	0.10	-2.1
3,337,990	+		Psest_3165	0.10	+1.0
3,337,990	+		Psest_3165	0.10	+1.4
3,337,990	+		Psest_3165	0.10	+0.3
3,337,990	+		Psest_3165	0.10	+0.8
3,337,990	+		Psest_3165	0.10	-0.0
3,337,990	+		Psest_3165	0.10	-0.7
3,337,990	+		Psest_3165	0.10	+0.5
3,337,990	+		Psest_3165	0.10	-1.3
3,337,990	+		Psest_3165	0.10	+1.8
3,337,990	+		Psest_3165	0.10	-0.1
3,337,990	+		Psest_3165	0.10	+1.3
3,337,990	+		Psest_3165	0.10	-1.4
3,337,990	+		Psest_3165	0.10	-0.5
3,337,990	+		Psest_3165	0.10	+1.3
3,337,990	+		Psest_3165	0.10	-1.4
3,337,990	+		Psest_3165	0.10	+0.6
3,337,990	+		Psest_3165	0.10	+0.2
3,337,991	-		Psest_3165	0.11	-0.9
3,337,991	-		Psest_3165	0.11	+1.7
3,337,991	-		Psest_3165	0.11	-1.4
3,337,991	-		Psest_3165	0.11	-2.8
3,337,991	-		Psest_3165	0.11	-0.0
3,337,991	-		Psest_3165	0.11	-1.0
3,337,991	-		Psest_3165	0.11	-2.1
3,337,991	-		Psest_3165	0.11	+0.6
3,337,991	-		Psest_3165	0.11	-1.5
3,337,991	-		Psest_3165	0.11	+0.9
3,337,991	-		Psest_3165	0.11	+0.1
3,337,991	-		Psest_3165	0.11	+0.1
3,337,991	-		Psest_3165	0.11	+1.0
3,337,991	-		Psest_3165	0.11	-1.2
3,337,991	-		Psest_3165	0.11	-0.8
3,337,991	-		Psest_3165	0.11	+2.0
3,337,991	-		Psest_3165	0.11	+1.0
3,337,991	-		Psest_3165	0.11	-0.0
3,337,991	-		Psest_3165	0.11	+0.5
3,337,991	-		Psest_3165	0.11	-1.2
3,337,991	-		Psest_3165	0.11	+0.8
3,337,991	-		Psest_3165	0.11	-0.1
3,337,991	-		Psest_3165	0.11	+0.6
3,337,991	-		Psest_3165	0.11	-0.7
3,337,991	-		Psest_3165	0.11	-0.9
3,337,991	-		Psest_3165	0.11	+1.9
3,337,991	-		Psest_3165	0.11	-2.2
3,337,991	-		Psest_3165	0.11	+0.5
3,337,991	-		Psest_3165	0.11	+0.8
3,338,013	-		Psest_3165	0.13	-0.7
3,338,037	+		Psest_3165	0.16	-0.7
3,338,053	+		Psest_3165	0.18	-0.3
3,338,116	+		Psest_3165	0.25	+2.3
3,338,219	+		Psest_3165	0.37	+2.8
3,338,219	+		Psest_3165	0.37	-0.7
3,338,219	+		Psest_3165	0.37	+0.9
3,338,219	+		Psest_3165	0.37	-0.8
3,338,219	+		Psest_3165	0.37	+1.1
3,338,219	+		Psest_3165	0.37	-1.0
3,338,219	+		Psest_3165	0.37	-1.0
3,338,220	-		Psest_3165	0.37	+0.9
3,338,220	-		Psest_3165	0.37	-0.5
3,338,220	-		Psest_3165	0.37	+0.8
3,338,220	-		Psest_3165	0.37	+0.2
3,338,220	-		Psest_3165	0.37	-0.8
3,338,322	+		Psest_3165	0.49	+0.8
3,338,322	+		Psest_3165	0.49	-2.0
3,338,322	+		Psest_3165	0.49	-1.8
3,338,322	+		Psest_3165	0.49	-0.2
3,338,322	+		Psest_3165	0.49	+1.4
3,338,322	+		Psest_3165	0.49	-0.5
3,338,322	+		Psest_3165	0.49	+1.7
3,338,323	-		Psest_3165	0.49	-0.1
3,338,323	-		Psest_3165	0.49	-0.2
3,338,323	-		Psest_3165	0.49	+0.1
3,338,323	-		Psest_3165	0.49	-0.8
3,338,323	-		Psest_3165	0.49	-0.9
3,338,323	-		Psest_3165	0.49	+1.1
3,338,323	-		Psest_3165	0.49	-0.8
3,338,323	-		Psest_3165	0.49	+0.9
3,338,323	-		Psest_3165	0.49	+0.4
3,338,323	-		Psest_3165	0.49	-0.1
3,338,407	+		Psest_3165	0.59	+1.4
3,338,407	+		Psest_3165	0.59	+1.4
3,338,407	+		Psest_3165	0.59	+2.2
3,338,566	-		Psest_3165	0.77	+0.5
3,338,651	+		Psest_3165	0.87	+1.3
3,338,696	+				-0.2
3,338,696	+				-0.7
3,338,697	-				+0.4
3,338,697	-				+0.2
3,338,720	-				-1.1
3,338,720	-				-0.5
3,338,810	+				+1.3
3,338,810	+				+0.0
3,338,810	+				+0.2
3,338,811	-				+0.3
3,338,834	-				+0.7
3,338,834	-				-3.5
3,338,834	-				-3.1
3,338,877	-				-1.3
3,339,018	+		Psest_3166	0.11	+1.3
3,339,019	-		Psest_3166	0.12	-0.3
3,339,099	-		Psest_3166	0.17	-1.9
3,339,184	+		Psest_3166	0.23	-0.4
3,339,185	-		Psest_3166	0.23	-1.4
3,339,218	-		Psest_3166	0.25	-2.0
3,339,285	+		Psest_3166	0.30	-0.5
3,339,285	+		Psest_3166	0.30	-0.3
3,339,335	-		Psest_3166	0.34	-0.1
3,339,422	-		Psest_3166	0.40	-0.4
3,339,422	-		Psest_3166	0.40	-1.5
3,339,422	-		Psest_3166	0.40	-2.1
3,339,422	-		Psest_3166	0.40	-0.2
3,339,422	-		Psest_3166	0.40	+0.0
3,339,422	-		Psest_3166	0.40	-3.1
3,339,826	+		Psest_3166	0.68	-0.5
3,339,826	+		Psest_3166	0.68	-0.4
3,339,826	+		Psest_3166	0.68	-1.9
3,339,826	+		Psest_3166	0.68	-0.7
3,339,826	+		Psest_3166	0.68	-1.0
3,339,826	+		Psest_3166	0.68	+2.1
3,339,827	-		Psest_3166	0.68	-1.4
3,339,827	-		Psest_3166	0.68	-0.2
3,339,838	+		Psest_3166	0.69	-1.7
3,339,838	+		Psest_3166	0.69	+1.3
3,339,838	+		Psest_3166	0.69	+1.3
3,339,838	+		Psest_3166	0.69	+0.3
3,339,839	-		Psest_3166	0.69	-0.6
3,340,114	+		Psest_3166	0.88	-3.2
3,340,114	+		Psest_3166	0.88	+2.7
3,340,115	-		Psest_3166	0.88	+1.0
3,340,115	-		Psest_3166	0.88	-0.2
3,340,415	-				+1.9
3,340,496	+		Psest_3167	0.48	-0.6
3,340,496	+		Psest_3167	0.48	-1.1
3,340,497	-		Psest_3167	0.49	+0.1
3,340,497	-		Psest_3167	0.49	-0.5
3,340,508	-		Psest_3167	0.56	+0.1
3,340,508	-		Psest_3167	0.56	-0.8
3,340,528	+		Psest_3167	0.68	+0.4
3,340,529	-		Psest_3167	0.68	+0.6
3,340,529	-		Psest_3167	0.68	+0.0
3,340,563	+		Psest_3167	0.89	-0.6
3,340,563	+		Psest_3167	0.89	-1.2
3,340,563	+		Psest_3167	0.89	-0.2
3,340,563	+		Psest_3167	0.89	+2.2
3,340,563	+		Psest_3167	0.89	+1.1
3,340,563	+		Psest_3167	0.89	+0.1
3,340,563	+		Psest_3167	0.89	+2.1
3,340,563	+		Psest_3167	0.89	-0.9
3,340,563	+		Psest_3167	0.89	-0.8
3,340,563	+		Psest_3167	0.89	-0.2
3,340,563	+		Psest_3167	0.89	-0.7
3,340,564	-				-1.4
3,340,564	-				+2.4
3,340,564	-				-0.6
3,340,564	-				+0.4
3,340,564	-				+0.2
3,340,564	-				+2.5
3,340,564	-				-1.1
3,340,575	+				-1.2
3,340,576	-				+0.2
3,340,576	-				-0.1
3,340,700	+		Psest_3168	0.25	-1.4
3,340,701	-		Psest_3168	0.25	+1.2
3,340,940	+		Psest_3168	0.77	-0.8
3,340,941	-		Psest_3168	0.78	+0.8
3,341,029	+				-0.3
3,341,029	+				+0.6
3,341,030	-				-0.6
3,341,035	+				-1.2
3,341,035	+				-0.5
3,341,035	+				-0.0
3,341,035	+				-1.4
3,341,035	+				+0.1
3,341,035	+				-0.8
3,341,035	+				-0.7
3,341,035	+				-0.0
3,341,035	+				-1.9
3,341,035	+				-1.2
3,341,036	-				+1.1
3,341,036	-				-1.0
3,341,036	-				-1.3
3,341,036	-				-0.9
3,341,036	-				-0.9
3,341,036	-				-1.0
3,341,036	-				+0.9
3,341,036	-				-0.6