Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2252

Experiment: nitrite (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite (N)
2,400,614	+		Psest_2251	0.23	+1.1
2,400,614	+		Psest_2251	0.23	-0.2
2,400,614	+		Psest_2251	0.23	+0.3
2,400,614	+		Psest_2251	0.23	+0.1
2,400,614	+		Psest_2251	0.23	-2.6
2,400,615	-		Psest_2251	0.23	-1.0
2,400,615	-		Psest_2251	0.23	-0.4
2,400,615	-		Psest_2251	0.23	+0.7
2,400,615	-		Psest_2251	0.23	+2.7
2,400,702	+		Psest_2251	0.31	-0.0
2,400,702	+		Psest_2251	0.31	-1.8
2,400,702	+		Psest_2251	0.31	-0.8
2,400,702	+		Psest_2251	0.31	-0.2
2,400,702	+		Psest_2251	0.31	-1.6
2,400,702	+		Psest_2251	0.31	+2.2
2,400,703	-		Psest_2251	0.32	-1.0
2,400,749	+		Psest_2251	0.36	-0.5
2,400,749	+		Psest_2251	0.36	-1.6
2,400,749	+		Psest_2251	0.36	+2.0
2,400,749	+		Psest_2251	0.36	-0.1
2,400,749	+		Psest_2251	0.36	-0.5
2,400,749	+		Psest_2251	0.36	+1.0
2,400,749	+		Psest_2251	0.36	+0.3
2,400,749	+		Psest_2251	0.36	+0.3
2,400,749	+		Psest_2251	0.36	-1.3
2,400,749	+		Psest_2251	0.36	+2.6
2,400,749	+		Psest_2251	0.36	-2.0
2,400,749	+		Psest_2251	0.36	-2.6
2,400,749	+		Psest_2251	0.36	+1.2
2,400,749	+		Psest_2251	0.36	-1.4
2,400,749	+		Psest_2251	0.36	-0.4
2,400,749	+		Psest_2251	0.36	-0.8
2,400,749	+		Psest_2251	0.36	+0.5
2,400,750	-		Psest_2251	0.36	-0.8
2,400,750	-		Psest_2251	0.36	-1.0
2,400,750	-		Psest_2251	0.36	+0.7
2,400,750	-		Psest_2251	0.36	+0.9
2,400,965	+		Psest_2251	0.56	-2.9
2,400,965	+		Psest_2251	0.56	+0.0
2,400,965	+		Psest_2251	0.56	-0.0
2,400,965	+		Psest_2251	0.56	+2.1
2,400,965	+		Psest_2251	0.56	-0.1
2,400,965	+		Psest_2251	0.56	+0.1
2,400,965	+		Psest_2251	0.56	+0.7
2,400,966	-		Psest_2251	0.56	+1.3
2,400,966	-		Psest_2251	0.56	-0.0
2,400,966	-		Psest_2251	0.56	+1.9
2,400,966	-		Psest_2251	0.56	+0.2
2,400,966	-		Psest_2251	0.56	+0.2
2,401,183	-		Psest_2251	0.76	-2.6
2,401,310	+		Psest_2251	0.88	-0.4
2,401,311	-		Psest_2251	0.88	+2.7
2,401,311	-		Psest_2251	0.88	+1.3
2,401,344	+				-0.6
2,401,344	+				+2.7
2,401,345	-				+1.0
2,401,345	-				+0.4
2,401,353	+				-2.0
2,401,498	+				+0.1
2,401,499	-				+0.3
2,401,809	+		Psest_2252	0.20	+2.4
2,401,809	+		Psest_2252	0.20	+1.1
2,401,809	+		Psest_2252	0.20	+1.2
2,401,810	-		Psest_2252	0.20	-1.0
2,401,921	+		Psest_2252	0.28	+0.8
2,401,922	-		Psest_2252	0.28	+0.2
2,401,944	+		Psest_2252	0.30	+0.6
2,401,944	+		Psest_2252	0.30	+0.3
2,401,945	-		Psest_2252	0.30	-0.8
2,401,945	-		Psest_2252	0.30	+3.1
2,401,945	-		Psest_2252	0.30	+1.2
2,401,945	-		Psest_2252	0.30	+1.6
2,401,945	-		Psest_2252	0.30	+1.4
2,401,987	-		Psest_2252	0.33	+0.7
2,402,020	+		Psest_2252	0.35	+0.7
2,402,092	+		Psest_2252	0.41	+0.0
2,402,237	-		Psest_2252	0.51	-0.5
2,402,335	+		Psest_2252	0.58	+0.5
2,402,443	+		Psest_2252	0.66	+1.2
2,402,443	+		Psest_2252	0.66	+1.4
2,402,443	+		Psest_2252	0.66	-2.0
2,402,444	-		Psest_2252	0.66	+0.1
2,402,444	-		Psest_2252	0.66	-0.3
2,402,464	+		Psest_2252	0.68	-0.2
2,402,465	-		Psest_2252	0.68	-1.4
2,402,689	-		Psest_2252	0.84	+2.7
2,402,689	-		Psest_2252	0.84	-1.2
2,402,689	-		Psest_2252	0.84	+1.0
2,402,847	+				-1.9
2,402,847	+				+0.1
2,402,887	-				-1.1
2,402,930	-				-0.1
2,402,930	-				+0.1
2,402,930	-				-2.3
2,402,933	+				+0.2
2,402,933	+				+0.1
2,402,933	+				+1.0
2,402,933	+				-1.0
2,402,933	+				+2.1
2,402,933	+				+0.1
2,402,933	+				-0.6
2,402,933	+				-1.4
2,402,933	+				+0.5
2,402,934	-				+0.0
2,402,934	-				-0.6
2,402,934	-				-0.1
2,403,033	+		Psest_2253	0.50	+1.0
2,403,033	+		Psest_2253	0.50	-0.2
2,403,033	+		Psest_2253	0.50	-0.1
2,403,033	+		Psest_2253	0.50	+0.7
2,403,034	-		Psest_2253	0.50	-0.4
2,403,082	-		Psest_2253	0.71	+0.2
2,403,218	-				+1.4
2,403,218	-				+1.4
2,403,218	-				-0.3
2,403,218	-				-1.6
2,403,232	+				+0.4
2,403,232	+				+4.0
2,403,232	+				-1.4
2,403,232	+				+0.9
2,403,232	+				+1.0
2,403,232	+				+0.3
2,403,232	+				-1.3
2,403,232	+				+0.4
2,403,232	+				-0.4
2,403,232	+				-0.3
2,403,232	+				-0.9
2,403,233	-				+0.9
2,403,233	-				+0.2
2,403,233	-				+0.8
2,403,234	+				+0.7
2,403,234	+				+0.2
2,403,234	+				-1.4
2,403,234	+				+1.2
2,403,234	+				+0.9
2,403,234	+				-1.2
2,403,234	+				-0.1
2,403,234	+				-0.6
2,403,234	+				+0.7
2,403,234	+				+0.3
2,403,234	+				+1.5
2,403,234	+				-1.3
2,403,235	-				-0.4
2,403,235	-				-1.5
2,403,235	-				-0.4
2,403,235	-				-0.6
2,403,235	-				+0.4
2,403,244	+				-1.8
2,403,279	+				+1.8
2,403,279	+				-0.7
2,403,279	+				+0.4
2,403,279	+				-0.6
2,403,279	+				-0.7
2,403,279	+				-0.3
2,403,279	+				+0.2
2,403,279	+				+1.2
2,403,280	-				-0.6
2,403,280	-				-1.1
2,403,280	-				-1.0
2,403,478	+				-0.9
2,403,478	+				-0.8
2,403,479	-				-1.3
2,403,479	-				-1.0
2,403,479	-				-0.7
2,403,735	+				-0.8
2,403,735	+				+1.3
2,403,735	+				+0.7
2,403,735	+				+1.3
2,403,736	-				-0.4
2,403,736	-				-2.5
2,403,736	-				+0.4
2,403,736	-				+0.1
2,403,736	-				-1.0
2,403,736	-				-0.3
2,403,737	+				+1.3
2,403,737	+				+0.9
2,403,737	+				+0.5
2,403,737	+				-2.1
2,403,737	+				-0.3
2,403,737	+				+0.2
2,403,737	+				-1.6
2,403,737	+				+0.4
2,403,737	+				-1.8
2,403,737	+				-0.4
2,403,738	-				-1.3
2,403,738	-				-0.3
2,403,738	-				+1.3
2,403,738	-				+1.0
2,403,738	-				-1.6
2,403,738	-				-0.1
2,403,738	-				-0.4
2,403,738	-				+0.7
2,403,738	-				+0.6
2,403,738	-				+0.6
2,403,738	-				-0.6