Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3789

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
3,958,338	+		Psest_3787	0.53	+0.6
3,958,445	+		Psest_3787	0.71	+0.4
3,958,445	+				-2.0
3,958,445	+		Psest_3787	0.71	-0.1
3,958,445	+		Psest_3787	0.71	-0.2
3,958,446	-		Psest_3787	0.71	+0.6
3,958,446	-		Psest_3787	0.71	+0.3
3,958,446	-		Psest_3787	0.71	-0.5
3,958,446	-		Psest_3787	0.71	-0.4
3,958,547	+		Psest_3787	0.89	+0.5
3,958,547	+		Psest_3787	0.89	-0.3
3,958,547	+		Psest_3787	0.89	+0.1
3,958,548	-		Psest_3787	0.89	-0.1
3,958,548	-		Psest_3787	0.89	+1.1
3,958,742	+				+0.6
3,958,743	-				-0.4
3,958,767	+				+0.6
3,958,767	+				-0.1
3,958,768	-				+0.5
3,958,768	-				-1.2
3,958,768	-				+1.1
3,958,768	-				+0.0
3,959,038	+		Psest_3788	0.50	+0.3
3,959,038	+		Psest_3788	0.50	-0.2
3,959,039	-		Psest_3788	0.50	-1.1
3,959,039	-		Psest_3788	0.50	+0.7
3,959,039	-		Psest_3788	0.50	+0.1
3,959,315	+				-0.1
3,959,471	+		Psest_3789	0.35	+1.2
3,959,471	+		Psest_3789	0.35	+0.6
3,959,472	-		Psest_3789	0.35	-0.1
3,959,476	+		Psest_3789	0.36	-0.9
3,959,669	-		Psest_3789	0.68	+2.6
3,959,677	+		Psest_3789	0.69	-0.8
3,959,677	+		Psest_3789	0.69	+1.1
3,959,683	+		Psest_3789	0.70	+0.1
3,959,779	+		Psest_3789	0.86	-2.8
3,959,779	+		Psest_3789	0.86	+0.6
3,959,779	+		Psest_3789	0.86	+2.6
3,959,779	+		Psest_3789	0.86	+1.0
3,959,780	-		Psest_3789	0.86	-0.5
3,959,787	+		Psest_3789	0.87	-0.5
3,959,928	-				-0.5
3,960,219	+		Psest_3790	0.52	-1.7
3,960,301	+		Psest_3790	0.71	-1.9
3,960,301	+		Psest_3790	0.71	-1.1
3,960,301	+		Psest_3790	0.71	-0.5
3,960,301	+		Psest_3790	0.71	+0.6
3,960,301	+		Psest_3790	0.71	-0.3
3,960,301	+		Psest_3790	0.71	-2.3
3,960,301	+		Psest_3790	0.71	-1.3
3,960,302	-		Psest_3790	0.71	-2.2
3,960,302	-		Psest_3790	0.71	-1.9
3,960,302	-		Psest_3790	0.71	-1.0
3,960,302	-		Psest_3790	0.71	-1.5
3,960,302	-		Psest_3790	0.71	-1.1
3,960,302	-		Psest_3790	0.71	-2.6
3,960,302	-		Psest_3790	0.71	-1.3
3,960,302	-		Psest_3790	0.71	+0.1
3,960,302	-		Psest_3790	0.71	-0.8
3,960,302	-		Psest_3790	0.71	-0.1
3,960,302	-		Psest_3790	0.71	-2.9
3,960,302	-		Psest_3790	0.71	-0.6
3,960,302	-		Psest_3790	0.71	-0.9
3,960,302	-		Psest_3790	0.71	+2.3
3,960,302	-		Psest_3790	0.71	-0.5
3,960,302	-		Psest_3790	0.71	-0.5
3,960,302	-		Psest_3790	0.71	-0.3
3,960,302	-		Psest_3790	0.71	-0.0
3,960,305	+		Psest_3790	0.72	-2.8
3,960,305	+		Psest_3790	0.72	-2.5
3,960,305	+		Psest_3790	0.72	-0.3
3,960,305	+		Psest_3790	0.72	-1.9
3,960,305	+		Psest_3790	0.72	-3.5
3,960,305	+		Psest_3790	0.72	-2.6
3,960,305	+		Psest_3790	0.72	-1.4
3,960,305	+		Psest_3790	0.72	-0.5
3,960,305	+		Psest_3790	0.72	-0.3
3,960,305	+		Psest_3790	0.72	-0.8
3,960,305	+		Psest_3790	0.72	-1.9
3,960,305	+		Psest_3790	0.72	-0.9
3,960,305	+		Psest_3790	0.72	-1.3
3,960,305	+		Psest_3790	0.72	+0.3
3,960,305	+		Psest_3790	0.72	-0.7
3,960,305	+		Psest_3790	0.72	-0.5
3,960,305	+		Psest_3790	0.72	-0.5
3,960,306	-		Psest_3790	0.72	-2.3
3,960,306	-		Psest_3790	0.72	-1.2
3,960,306	-		Psest_3790	0.72	-2.9
3,960,306	-		Psest_3790	0.72	-1.3
3,960,306	-		Psest_3790	0.72	+0.5
3,960,306	-		Psest_3790	0.72	-1.5
3,960,306	-		Psest_3790	0.72	-1.7
3,960,306	-		Psest_3790	0.72	-0.9
3,960,306	-		Psest_3790	0.72	-1.9
3,960,306	-		Psest_3790	0.72	-1.9
3,960,306	-		Psest_3790	0.72	-1.5
3,960,306	-		Psest_3790	0.72	-1.5
3,960,306	-		Psest_3790	0.72	-1.4
3,960,398	+				-1.8
3,960,428	-				-1.7
3,960,428	-				-0.3
3,960,428	-				-2.7
3,960,428	-				-2.3
3,960,484	+				-1.2
3,960,484	+				-0.7
3,960,484	+				-0.3
3,960,484	+				-2.0
3,960,485	-				-0.5
3,960,485	-				-0.0
3,960,486	+				-1.5
3,960,487	-				-0.6
3,960,514	+				+0.0
3,960,515	-				+0.5
3,960,675	-		Psest_3791	0.16	-0.3
3,960,675	-		Psest_3791	0.16	+0.2
3,960,677	+		Psest_3791	0.17	-0.5
3,960,677	+		Psest_3791	0.17	-3.1
3,960,677	+		Psest_3791	0.17	-0.3
3,960,677	+		Psest_3791	0.17	-0.6
3,960,677	+		Psest_3791	0.17	+0.1
3,960,677	+		Psest_3791	0.17	+0.2
3,960,677	+		Psest_3791	0.17	+0.8
3,960,701	+		Psest_3791	0.21	-1.2
3,960,701	+		Psest_3791	0.21	-0.3
3,960,701	+		Psest_3791	0.21	-1.3
3,960,701	+		Psest_3791	0.21	-0.6
3,960,701	+		Psest_3791	0.21	-0.0
3,960,701	+		Psest_3791	0.21	-1.7
3,960,701	+		Psest_3791	0.21	-1.5
3,960,701	+		Psest_3791	0.21	-0.3
3,960,701	+		Psest_3791	0.21	-0.3
3,960,701	+		Psest_3791	0.21	-1.3
3,960,701	+		Psest_3791	0.21	+0.5
3,960,701	+		Psest_3791	0.21	-1.2
3,960,701	+		Psest_3791	0.21	-0.3
3,960,701	+		Psest_3791	0.21	+1.7
3,960,701	+		Psest_3791	0.21	+0.1
3,960,701	+		Psest_3791	0.21	+0.4
3,960,701	+		Psest_3791	0.21	-3.7
3,960,701	+		Psest_3791	0.21	+0.6
3,960,701	+		Psest_3791	0.21	+0.8
3,960,701	+		Psest_3791	0.21	-0.8
3,960,701	+		Psest_3791	0.21	+1.0
3,960,701	+		Psest_3791	0.21	-0.4
3,960,701	+		Psest_3791	0.21	+0.2
3,960,702	-		Psest_3791	0.21	+0.5
3,960,702	-		Psest_3791	0.21	-0.3
3,960,702	-		Psest_3791	0.21	-1.8
3,960,702	-		Psest_3791	0.21	-2.6
3,960,702	-		Psest_3791	0.21	-2.0
3,960,702	-		Psest_3791	0.21	-0.2
3,960,702	-		Psest_3791	0.21	+0.9
3,960,702	-		Psest_3791	0.21	-0.5
3,960,703	+		Psest_3791	0.21	-0.7
3,960,703	+		Psest_3791	0.21	-0.4
3,960,703	+		Psest_3791	0.21	+0.7
3,960,703	+		Psest_3791	0.21	+0.3
3,960,703	+		Psest_3791	0.21	+0.4
3,960,703	+		Psest_3791	0.21	-0.2
3,960,703	+		Psest_3791	0.21	+1.0
3,960,703	+		Psest_3791	0.21	-1.7
3,960,703	+		Psest_3791	0.21	+0.5
3,960,703	+		Psest_3791	0.21	+1.1
3,960,703	+		Psest_3791	0.21	-0.2
3,960,703	+		Psest_3791	0.21	-0.1
3,960,703	+		Psest_3791	0.21	+0.6
3,960,703	+		Psest_3791	0.21	+0.8
3,960,704	-		Psest_3791	0.21	-1.0
3,960,704	-		Psest_3791	0.21	-0.9
3,960,704	-		Psest_3791	0.21	+1.6
3,960,704	-		Psest_3791	0.21	-0.0
3,960,704	-		Psest_3791	0.21	-0.2
3,960,704	-		Psest_3791	0.21	+0.4
3,960,704	-		Psest_3791	0.21	+0.1
3,960,704	-		Psest_3791	0.21	+0.2
3,960,704	-		Psest_3791	0.21	+0.0
3,960,704	-		Psest_3791	0.21	-0.3
3,960,704	-		Psest_3791	0.21	+0.4
3,960,704	-		Psest_3791	0.21	+0.2
3,960,704	-		Psest_3791	0.21	+2.5
3,960,704	-		Psest_3791	0.21	-0.3
3,960,704	-		Psest_3791	0.21	+2.1
3,960,704	-		Psest_3791	0.21	+1.0
3,960,704	-		Psest_3791	0.21	+0.9
3,960,704	-		Psest_3791	0.21	+1.9
3,960,807	-		Psest_3791	0.40	-0.7