Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0148 and Psest_0149 are separated by 11 nucleotides Psest_0149 and Psest_0150 are separated by 26 nucleotides Psest_0150 and Psest_0151 are separated by 357 nucleotides
Psest_0148: Psest_0148 - nitrate transport ATP-binding subunits C and D, at 147,280 to 148,062
_0148
Psest_0149: Psest_0149 - nitrate ABC transporter, permease protein, at 148,074 to 148,943
_0149
Psest_0150: Psest_0150 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 148,970 to 150,301
_0150
Psest_0151: Psest_0151 - Response regulator with putative antiterminator output domain, at 150,659 to 151,969
_0151
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 148.055 kb on + strand at 148.055 kb on + strand at 148.055 kb on + strand at 148.055 kb on + strand at 148.055 kb on + strand at 148.055 kb on + strand at 148.055 kb on + strand at 148.055 kb on + strand at 148.056 kb on - strand at 148.056 kb on - strand at 148.056 kb on - strand at 148.056 kb on - strand at 148.056 kb on - strand at 148.056 kb on - strand at 148.056 kb on - strand at 148.056 kb on - strand at 148.056 kb on - strand at 148.156 kb on + strand at 148.156 kb on + strand at 148.156 kb on + strand at 148.156 kb on + strand at 148.157 kb on - strand at 148.291 kb on - strand, within Psest_0149 at 148.306 kb on + strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.307 kb on - strand, within Psest_0149 at 148.342 kb on + strand, within Psest_0149 at 148.627 kb on + strand, within Psest_0149 at 148.699 kb on + strand, within Psest_0149 at 148.699 kb on + strand, within Psest_0149 at 148.699 kb on + strand, within Psest_0149 at 148.700 kb on - strand, within Psest_0149 at 148.700 kb on - strand, within Psest_0149 at 149.004 kb on + strand at 149.005 kb on - strand at 149.235 kb on + strand, within Psest_0150 at 149.235 kb on + strand, within Psest_0150 at 149.256 kb on + strand, within Psest_0150 at 149.340 kb on + strand, within Psest_0150 at 149.340 kb on + strand, within Psest_0150 at 149.341 kb on - strand, within Psest_0150 at 149.475 kb on + strand, within Psest_0150 at 149.475 kb on + strand, within Psest_0150 at 149.475 kb on + strand, within Psest_0150 at 149.475 kb on + strand, within Psest_0150 at 149.476 kb on - strand, within Psest_0150 at 149.544 kb on + strand, within Psest_0150 at 149.829 kb on + strand, within Psest_0150 at 149.935 kb on - strand, within Psest_0150 at 150.032 kb on + strand, within Psest_0150 at 150.033 kb on - strand, within Psest_0150 at 150.033 kb on - strand, within Psest_0150 at 150.033 kb on - strand, within Psest_0150 at 150.033 kb on - strand, within Psest_0150 at 150.054 kb on + strand, within Psest_0150 at 150.054 kb on + strand, within Psest_0150 at 150.055 kb on - strand, within Psest_0150 at 150.055 kb on - strand, within Psest_0150 at 150.725 kb on + strand at 150.725 kb on + strand at 150.726 kb on - strand at 150.726 kb on - strand at 150.789 kb on + strand at 150.790 kb on - strand, within Psest_0151 at 150.790 kb on - strand, within Psest_0151 at 150.790 kb on - strand, within Psest_0151 at 150.912 kb on - strand, within Psest_0151 at 150.912 kb on - strand, within Psest_0151 at 151.299 kb on - strand, within Psest_0151
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 148,055 + +0.7 148,055 + +0.2 148,055 + -0.1 148,055 + +0.4 148,055 + +0.9 148,055 + +0.3 148,055 + +0.6 148,055 + -0.4 148,056 - +0.0 148,056 - +0.1 148,056 - +0.5 148,056 - +1.2 148,056 - +0.3 148,056 - -2.4 148,056 - +0.6 148,056 - -0.9 148,056 - -0.4 148,156 + +0.1 148,156 + -0.7 148,156 + +0.2 148,156 + -0.4 148,157 - +1.0 148,291 - Psest_0149 0.25 -1.3 148,306 + Psest_0149 0.27 -0.4 148,307 - Psest_0149 0.27 -2.0 148,307 - Psest_0149 0.27 +0.5 148,307 - Psest_0149 0.27 +0.2 148,307 - Psest_0149 0.27 +0.9 148,307 - Psest_0149 0.27 -1.5 148,307 - Psest_0149 0.27 +2.8 148,307 - Psest_0149 0.27 -2.3 148,307 - Psest_0149 0.27 -0.4 148,307 - Psest_0149 0.27 -0.0 148,342 + Psest_0149 0.31 +0.3 148,627 + Psest_0149 0.64 -0.4 148,699 + Psest_0149 0.72 +0.6 148,699 + Psest_0149 0.72 +0.2 148,699 + Psest_0149 0.72 -0.7 148,700 - Psest_0149 0.72 +1.8 148,700 - Psest_0149 0.72 -0.5 149,004 + +0.5 149,005 - -0.3 149,235 + Psest_0150 0.20 -1.3 149,235 + Psest_0150 0.20 +0.2 149,256 + Psest_0150 0.21 -0.6 149,340 + Psest_0150 0.28 +0.5 149,340 + Psest_0150 0.28 -0.3 149,341 - Psest_0150 0.28 -2.6 149,475 + Psest_0150 0.38 +0.8 149,475 + Psest_0150 0.38 +1.2 149,475 + Psest_0150 0.38 +2.2 149,475 + Psest_0150 0.38 +0.3 149,476 - Psest_0150 0.38 +0.1 149,544 + Psest_0150 0.43 -0.9 149,829 + Psest_0150 0.64 -1.5 149,935 - Psest_0150 0.72 +1.0 150,032 + Psest_0150 0.80 +0.4 150,033 - Psest_0150 0.80 -0.4 150,033 - Psest_0150 0.80 +0.4 150,033 - Psest_0150 0.80 +0.0 150,033 - Psest_0150 0.80 +0.1 150,054 + Psest_0150 0.81 +0.3 150,054 + Psest_0150 0.81 +0.0 150,055 - Psest_0150 0.81 +0.5 150,055 - Psest_0150 0.81 +0.0 150,725 + +0.2 150,725 + -0.1 150,726 - -0.6 150,726 - -1.1 150,789 + +0.5 150,790 - Psest_0151 0.10 -0.5 150,790 - Psest_0151 0.10 +1.5 150,790 - Psest_0151 0.10 +1.0 150,912 - Psest_0151 0.19 -1.3 150,912 - Psest_0151 0.19 -0.3 151,299 - Psest_0151 0.49 -1.1
Or see this region's nucleotide sequence