Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0773

Experiment: Cytosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0772 and Psest_0773 overlap by 7 nucleotidesPsest_0773 and Psest_0774 are separated by 13 nucleotides Psest_0772: Psest_0772 - Cytochrome c553, at 840,685 to 841,371 _0772 Psest_0773: Psest_0773 - Cytosine deaminase and related metal-dependent hydrolases, at 841,365 to 842,600 _0773 Psest_0774: Psest_0774 - cytosine permease (from data), at 842,614 to 843,891 _0774 Position (kb) 841 842 843Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 840.379 kb on + strandat 840.379 kb on + strandat 840.380 kb on - strandat 840.380 kb on - strandat 840.380 kb on - strandat 840.384 kb on + strandat 840.385 kb on - strandat 840.385 kb on - strandat 840.487 kb on + strandat 840.509 kb on + strandat 840.509 kb on + strandat 840.509 kb on + strandat 840.510 kb on - strandat 840.510 kb on - strandat 840.631 kb on + strandat 840.631 kb on + strandat 840.631 kb on + strandat 840.766 kb on + strand, within Psest_0772at 840.767 kb on - strand, within Psest_0772at 840.767 kb on - strand, within Psest_0772at 840.838 kb on + strand, within Psest_0772at 840.908 kb on - strand, within Psest_0772at 841.015 kb on + strand, within Psest_0772at 841.016 kb on - strand, within Psest_0772at 841.016 kb on - strand, within Psest_0772at 841.174 kb on + strand, within Psest_0772at 841.175 kb on - strand, within Psest_0772at 841.289 kb on - strand, within Psest_0772at 841.289 kb on - strand, within Psest_0772at 841.755 kb on - strand, within Psest_0773at 841.858 kb on + strand, within Psest_0773at 841.858 kb on + strand, within Psest_0773at 841.859 kb on - strand, within Psest_0773at 841.859 kb on - strand, within Psest_0773at 841.903 kb on - strand, within Psest_0773at 842.217 kb on - strand, within Psest_0773at 842.454 kb on + strand, within Psest_0773at 842.457 kb on + strand, within Psest_0773at 842.457 kb on + strand, within Psest_0773at 842.682 kb on + strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.684 kb on + strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.705 kb on - strandat 842.738 kb on + strandat 842.738 kb on + strandat 842.762 kb on + strand, within Psest_0774at 842.762 kb on + strand, within Psest_0774at 842.786 kb on + strand, within Psest_0774at 842.787 kb on - strand, within Psest_0774at 842.787 kb on - strand, within Psest_0774at 842.787 kb on - strand, within Psest_0774at 842.843 kb on + strand, within Psest_0774at 842.843 kb on + strand, within Psest_0774at 842.843 kb on + strand, within Psest_0774at 842.843 kb on + strand, within Psest_0774at 842.858 kb on - strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.919 kb on - strand, within Psest_0774at 842.919 kb on - strand, within Psest_0774at 842.919 kb on - strand, within Psest_0774at 842.919 kb on - strand, within Psest_0774at 843.023 kb on + strand, within Psest_0774at 843.023 kb on + strand, within Psest_0774at 843.023 kb on + strand, within Psest_0774at 843.024 kb on - strand, within Psest_0774at 843.024 kb on - strand, within Psest_0774at 843.385 kb on + strand, within Psest_0774at 843.385 kb on + strand, within Psest_0774at 843.560 kb on + strand, within Psest_0774at 843.568 kb on + strand, within Psest_0774at 843.568 kb on + strand, within Psest_0774at 843.569 kb on - strand, within Psest_0774

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
remove
840,379 + +1.3
840,379 + -0.3
840,380 - +1.5
840,380 - -0.2
840,380 - -0.9
840,384 + -2.3
840,385 - -1.4
840,385 - +0.2
840,487 + -0.9
840,509 + +0.1
840,509 + +0.8
840,509 + +0.3
840,510 - -1.3
840,510 - -0.7
840,631 + -0.1
840,631 + +0.9
840,631 + -0.2
840,766 + Psest_0772 0.12 -0.6
840,767 - Psest_0772 0.12 +0.1
840,767 - Psest_0772 0.12 -0.0
840,838 + Psest_0772 0.22 -0.5
840,908 - Psest_0772 0.32 -3.2
841,015 + Psest_0772 0.48 +0.3
841,016 - Psest_0772 0.48 -2.3
841,016 - Psest_0772 0.48 -0.7
841,174 + Psest_0772 0.71 -0.3
841,175 - Psest_0772 0.71 +0.8
841,289 - Psest_0772 0.88 +0.0
841,289 - Psest_0772 0.88 +0.4
841,755 - Psest_0773 0.32 -3.9
841,858 + Psest_0773 0.40 -2.2
841,858 + Psest_0773 0.40 -4.3
841,859 - Psest_0773 0.40 -4.8
841,859 - Psest_0773 0.40 -2.5
841,903 - Psest_0773 0.44 -4.3
842,217 - Psest_0773 0.69 -4.0
842,454 + Psest_0773 0.88 -3.1
842,457 + Psest_0773 0.88 -2.0
842,457 + Psest_0773 0.88 -2.9
842,682 + -4.3
842,683 - -2.2
842,683 - -4.4
842,683 - -2.7
842,683 - -3.7
842,683 - -1.7
842,683 - -3.9
842,683 - -3.5
842,684 + -3.0
842,685 - -1.9
842,685 - -3.2
842,685 - -4.1
842,685 - -3.8
842,685 - -3.7
842,685 - -3.1
842,685 - -4.9
842,685 - -4.0
842,685 - -2.1
842,685 - -2.1
842,685 - -2.8
842,705 - -2.8
842,738 + -4.9
842,738 + -1.7
842,762 + Psest_0774 0.12 -3.7
842,762 + Psest_0774 0.12 -2.3
842,786 + Psest_0774 0.13 -2.9
842,787 - Psest_0774 0.14 -3.0
842,787 - Psest_0774 0.14 -2.3
842,787 - Psest_0774 0.14 -4.0
842,843 + Psest_0774 0.18 -2.0
842,843 + Psest_0774 0.18 -4.0
842,843 + Psest_0774 0.18 -3.3
842,843 + Psest_0774 0.18 +0.5
842,858 - Psest_0774 0.19 -2.6
842,918 + Psest_0774 0.24 -2.7
842,918 + Psest_0774 0.24 +0.6
842,918 + Psest_0774 0.24 -3.1
842,918 + Psest_0774 0.24 -2.5
842,918 + Psest_0774 0.24 -2.7
842,918 + Psest_0774 0.24 -1.7
842,918 + Psest_0774 0.24 -3.3
842,919 - Psest_0774 0.24 -1.6
842,919 - Psest_0774 0.24 -2.5
842,919 - Psest_0774 0.24 -4.5
842,919 - Psest_0774 0.24 -3.3
843,023 + Psest_0774 0.32 -4.0
843,023 + Psest_0774 0.32 -3.5
843,023 + Psest_0774 0.32 -2.3
843,024 - Psest_0774 0.32 -3.6
843,024 - Psest_0774 0.32 -4.3
843,385 + Psest_0774 0.60 -1.6
843,385 + Psest_0774 0.60 -2.2
843,560 + Psest_0774 0.74 -2.9
843,568 + Psest_0774 0.75 -3.0
843,568 + Psest_0774 0.75 -3.6
843,569 - Psest_0774 0.75 -3.2

Or see this region's nucleotide sequence