Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3771

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3769 and Psest_3770 are separated by 78 nucleotidesPsest_3770 and Psest_3771 are separated by 103 nucleotidesPsest_3771 and Psest_3772 are separated by 115 nucleotides Psest_3769: Psest_3769 - hypothetical protein, at 3,936,432 to 3,936,761 _3769 Psest_3770: Psest_3770 - secondary thiamine-phosphate synthase enzyme, at 3,936,840 to 3,937,265 _3770 Psest_3771: Psest_3771 - probable ammonium transporter, marine subtype, at 3,937,369 to 3,938,619 _3771 Psest_3772: Psest_3772 - ammonium transporter, at 3,938,735 to 3,940,051 _3772 Position (kb) 3937 3938 3939Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3936.437 kb on + strandat 3936.452 kb on - strandat 3936.744 kb on + strandat 3936.744 kb on + strandat 3936.744 kb on + strandat 3936.744 kb on + strandat 3936.744 kb on + strandat 3936.745 kb on - strandat 3936.745 kb on - strandat 3936.745 kb on - strandat 3936.793 kb on - strandat 3936.793 kb on - strandat 3936.793 kb on - strandat 3936.793 kb on - strandat 3936.793 kb on - strandat 3936.793 kb on - strandat 3936.793 kb on - strandat 3936.798 kb on - strandat 3936.798 kb on - strandat 3936.798 kb on - strandat 3936.799 kb on + strandat 3936.870 kb on + strandat 3936.871 kb on - strandat 3936.910 kb on + strand, within Psest_3770at 3936.911 kb on - strand, within Psest_3770at 3936.911 kb on - strand, within Psest_3770at 3936.911 kb on - strand, within Psest_3770at 3936.911 kb on - strand, within Psest_3770at 3936.911 kb on - strand, within Psest_3770at 3936.911 kb on - strand, within Psest_3770at 3936.911 kb on - strand, within Psest_3770at 3937.021 kb on + strand, within Psest_3770at 3937.021 kb on + strand, within Psest_3770at 3937.021 kb on + strand, within Psest_3770at 3937.022 kb on - strand, within Psest_3770at 3937.033 kb on + strand, within Psest_3770at 3937.033 kb on + strand, within Psest_3770at 3937.034 kb on - strand, within Psest_3770at 3937.133 kb on + strand, within Psest_3770at 3937.134 kb on - strand, within Psest_3770at 3937.134 kb on - strand, within Psest_3770at 3937.134 kb on - strand, within Psest_3770at 3937.152 kb on + strand, within Psest_3770at 3937.153 kb on - strand, within Psest_3770at 3937.306 kb on + strandat 3937.306 kb on + strandat 3937.306 kb on + strandat 3937.307 kb on - strandat 3937.307 kb on - strandat 3937.356 kb on + strandat 3937.356 kb on + strandat 3937.356 kb on + strandat 3937.356 kb on + strandat 3937.357 kb on - strandat 3937.357 kb on - strandat 3937.430 kb on + strandat 3937.430 kb on + strandat 3937.430 kb on + strandat 3937.430 kb on + strandat 3937.431 kb on - strandat 3937.431 kb on - strandat 3937.505 kb on - strand, within Psest_3771at 3937.505 kb on - strand, within Psest_3771at 3937.505 kb on - strand, within Psest_3771at 3937.593 kb on + strand, within Psest_3771at 3937.594 kb on - strand, within Psest_3771at 3938.021 kb on + strand, within Psest_3771at 3938.022 kb on - strand, within Psest_3771at 3938.022 kb on - strand, within Psest_3771at 3938.022 kb on - strand, within Psest_3771at 3938.022 kb on - strand, within Psest_3771at 3938.169 kb on - strand, within Psest_3771at 3938.303 kb on + strand, within Psest_3771at 3938.304 kb on - strand, within Psest_3771at 3938.304 kb on - strand, within Psest_3771at 3938.306 kb on + strand, within Psest_3771at 3938.306 kb on + strand, within Psest_3771at 3938.306 kb on + strand, within Psest_3771at 3938.306 kb on + strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.406 kb on - strand, within Psest_3771at 3938.406 kb on - strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.417 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.453 kb on + strand, within Psest_3771at 3938.453 kb on + strand, within Psest_3771at 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.571 kb on - strandat 3938.571 kb on - strandat 3938.571 kb on - strandat 3938.571 kb on - strandat 3938.571 kb on - strandat 3938.614 kb on - strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.845 kb on - strandat 3938.862 kb on + strandat 3938.863 kb on - strandat 3938.863 kb on - strandat 3938.863 kb on - strandat 3939.275 kb on - strand, within Psest_3772at 3939.537 kb on + strand, within Psest_3772at 3939.537 kb on + strand, within Psest_3772at 3939.537 kb on + strand, within Psest_3772at 3939.537 kb on + strand, within Psest_3772at 3939.538 kb on - strand, within Psest_3772at 3939.538 kb on - strand, within Psest_3772at 3939.538 kb on - strand, within Psest_3772

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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3,936,437 + -0.1
3,936,452 - -0.4
3,936,744 + +0.3
3,936,744 + +0.9
3,936,744 + +1.4
3,936,744 + +1.0
3,936,744 + -0.8
3,936,745 - -1.3
3,936,745 - -0.6
3,936,745 - +0.2
3,936,793 - +0.2
3,936,793 - -0.2
3,936,793 - -0.1
3,936,793 - -0.7
3,936,793 - +0.3
3,936,793 - -0.9
3,936,793 - +0.7
3,936,798 - +0.5
3,936,798 - -0.3
3,936,798 - -0.2
3,936,799 + -1.1
3,936,870 + +0.7
3,936,871 - -0.5
3,936,910 + Psest_3770 0.16 +0.7
3,936,911 - Psest_3770 0.17 +0.5
3,936,911 - Psest_3770 0.17 -0.1
3,936,911 - Psest_3770 0.17 -0.2
3,936,911 - Psest_3770 0.17 -1.9
3,936,911 - Psest_3770 0.17 -0.8
3,936,911 - Psest_3770 0.17 -1.6
3,936,911 - Psest_3770 0.17 -1.2
3,937,021 + Psest_3770 0.42 -0.2
3,937,021 + Psest_3770 0.42 -0.0
3,937,021 + Psest_3770 0.42 -1.3
3,937,022 - Psest_3770 0.43 -1.7
3,937,033 + Psest_3770 0.45 +0.8
3,937,033 + Psest_3770 0.45 -0.6
3,937,034 - Psest_3770 0.46 +0.8
3,937,133 + Psest_3770 0.69 +0.1
3,937,134 - Psest_3770 0.69 +0.6
3,937,134 - Psest_3770 0.69 -0.5
3,937,134 - Psest_3770 0.69 +1.6
3,937,152 + Psest_3770 0.73 -1.1
3,937,153 - Psest_3770 0.73 +0.3
3,937,306 + -0.7
3,937,306 + -0.1
3,937,306 + +0.8
3,937,307 - -3.8
3,937,307 - +1.0
3,937,356 + -0.7
3,937,356 + +0.1
3,937,356 + -0.3
3,937,356 + -1.3
3,937,357 - -0.2
3,937,357 - -0.1
3,937,430 + -2.2
3,937,430 + -1.3
3,937,430 + -1.2
3,937,430 + -1.7
3,937,431 - -0.2
3,937,431 - -0.8
3,937,505 - Psest_3771 0.11 -2.6
3,937,505 - Psest_3771 0.11 -0.9
3,937,505 - Psest_3771 0.11 -1.2
3,937,593 + Psest_3771 0.18 -2.3
3,937,594 - Psest_3771 0.18 -2.0
3,938,021 + Psest_3771 0.52 -1.8
3,938,022 - Psest_3771 0.52 -3.8
3,938,022 - Psest_3771 0.52 -0.3
3,938,022 - Psest_3771 0.52 -0.7
3,938,022 - Psest_3771 0.52 -1.6
3,938,169 - Psest_3771 0.64 -0.2
3,938,303 + Psest_3771 0.75 -0.8
3,938,304 - Psest_3771 0.75 -2.6
3,938,304 - Psest_3771 0.75 -1.7
3,938,306 + Psest_3771 0.75 -3.3
3,938,306 + Psest_3771 0.75 -1.9
3,938,306 + Psest_3771 0.75 -2.2
3,938,306 + Psest_3771 0.75 -3.2
3,938,307 - Psest_3771 0.75 -2.0
3,938,307 - Psest_3771 0.75 -2.4
3,938,307 - Psest_3771 0.75 -2.5
3,938,307 - Psest_3771 0.75 -2.6
3,938,307 - Psest_3771 0.75 -2.5
3,938,307 - Psest_3771 0.75 -0.9
3,938,307 - Psest_3771 0.75 -2.8
3,938,405 + Psest_3771 0.83 -2.3
3,938,405 + Psest_3771 0.83 -0.5
3,938,405 + Psest_3771 0.83 -3.3
3,938,405 + Psest_3771 0.83 -2.6
3,938,405 + Psest_3771 0.83 -2.1
3,938,405 + Psest_3771 0.83 -3.3
3,938,405 + Psest_3771 0.83 -2.8
3,938,405 + Psest_3771 0.83 -3.0
3,938,406 - Psest_3771 0.83 -2.2
3,938,406 - Psest_3771 0.83 -1.7
3,938,414 + Psest_3771 0.84 -2.5
3,938,414 + Psest_3771 0.84 -1.6
3,938,414 + Psest_3771 0.84 -2.5
3,938,414 + Psest_3771 0.84 -1.7
3,938,414 + Psest_3771 0.84 -4.9
3,938,414 + Psest_3771 0.84 -2.0
3,938,414 + Psest_3771 0.84 -1.9
3,938,414 + Psest_3771 0.84 -0.3
3,938,414 + Psest_3771 0.84 -2.9
3,938,414 + Psest_3771 0.84 -3.6
3,938,414 + Psest_3771 0.84 -1.8
3,938,414 + Psest_3771 0.84 -2.8
3,938,414 + Psest_3771 0.84 -5.1
3,938,414 + Psest_3771 0.84 -2.8
3,938,414 + Psest_3771 0.84 -2.8
3,938,414 + Psest_3771 0.84 -1.4
3,938,414 + Psest_3771 0.84 -2.0
3,938,414 + Psest_3771 0.84 -3.0
3,938,414 + Psest_3771 0.84 -1.6
3,938,414 + Psest_3771 0.84 -2.7
3,938,415 - Psest_3771 0.84 -0.9
3,938,415 - Psest_3771 0.84 -3.3
3,938,415 - Psest_3771 0.84 -1.3
3,938,415 - Psest_3771 0.84 -2.2
3,938,415 - Psest_3771 0.84 -1.3
3,938,415 - Psest_3771 0.84 -3.2
3,938,415 - Psest_3771 0.84 -1.9
3,938,415 - Psest_3771 0.84 -2.2
3,938,415 - Psest_3771 0.84 -0.8
3,938,415 - Psest_3771 0.84 -1.7
3,938,415 - Psest_3771 0.84 -1.1
3,938,415 - Psest_3771 0.84 -0.6
3,938,415 - Psest_3771 0.84 -1.9
3,938,415 - Psest_3771 0.84 -2.5
3,938,415 - Psest_3771 0.84 -1.6
3,938,415 - Psest_3771 0.84 -2.1
3,938,415 - Psest_3771 0.84 -2.3
3,938,415 - Psest_3771 0.84 -1.9
3,938,415 - Psest_3771 0.84 -2.6
3,938,415 - Psest_3771 0.84 -1.8
3,938,415 - Psest_3771 0.84 -1.7
3,938,415 - Psest_3771 0.84 -0.6
3,938,415 - Psest_3771 0.84 -3.9
3,938,415 - Psest_3771 0.84 -1.0
3,938,415 - Psest_3771 0.84 -2.2
3,938,415 - Psest_3771 0.84 -1.2
3,938,415 - Psest_3771 0.84 -2.2
3,938,415 - Psest_3771 0.84 -2.5
3,938,415 - Psest_3771 0.84 -1.2
3,938,415 - Psest_3771 0.84 -3.0
3,938,415 - Psest_3771 0.84 -2.8
3,938,415 - Psest_3771 0.84 -2.3
3,938,417 + Psest_3771 0.84 -2.0
3,938,432 + Psest_3771 0.85 -2.4
3,938,432 + Psest_3771 0.85 -2.8
3,938,432 + Psest_3771 0.85 -2.2
3,938,432 + Psest_3771 0.85 -2.7
3,938,432 + Psest_3771 0.85 -2.1
3,938,432 + Psest_3771 0.85 -1.8
3,938,432 + Psest_3771 0.85 -1.3
3,938,432 + Psest_3771 0.85 -0.6
3,938,432 + Psest_3771 0.85 -2.3
3,938,432 + Psest_3771 0.85 -2.7
3,938,432 + Psest_3771 0.85 -1.8
3,938,433 - Psest_3771 0.85 -1.3
3,938,433 - Psest_3771 0.85 -2.5
3,938,433 - Psest_3771 0.85 -3.0
3,938,433 - Psest_3771 0.85 -1.9
3,938,433 - Psest_3771 0.85 -1.9
3,938,433 - Psest_3771 0.85 -1.8
3,938,433 - Psest_3771 0.85 -0.9
3,938,433 - Psest_3771 0.85 -3.2
3,938,433 - Psest_3771 0.85 -2.2
3,938,433 - Psest_3771 0.85 -1.2
3,938,433 - Psest_3771 0.85 -1.2
3,938,433 - Psest_3771 0.85 -3.3
3,938,433 - Psest_3771 0.85 -2.5
3,938,453 + Psest_3771 0.87 -3.6
3,938,453 + Psest_3771 0.87 -2.8
3,938,570 + -1.0
3,938,570 + -2.9
3,938,570 + -1.9
3,938,570 + -1.8
3,938,570 + -2.2
3,938,570 + -1.7
3,938,570 + -1.7
3,938,570 + -2.3
3,938,570 + -3.0
3,938,571 - -1.7
3,938,571 - -0.2
3,938,571 - -1.5
3,938,571 - -2.3
3,938,571 - -1.6
3,938,614 - -2.3
3,938,844 + -3.0
3,938,844 + -3.3
3,938,844 + -2.6
3,938,844 + -2.8
3,938,844 + -3.5
3,938,844 + -1.0
3,938,844 + +0.4
3,938,844 + -2.7
3,938,845 - +0.1
3,938,862 + -2.1
3,938,863 - +0.8
3,938,863 - +0.9
3,938,863 - +0.8
3,939,275 - Psest_3772 0.41 -0.0
3,939,537 + Psest_3772 0.61 -1.6
3,939,537 + Psest_3772 0.61 -1.8
3,939,537 + Psest_3772 0.61 -2.0
3,939,537 + Psest_3772 0.61 +0.6
3,939,538 - Psest_3772 0.61 +0.0
3,939,538 - Psest_3772 0.61 -1.4
3,939,538 - Psest_3772 0.61 -0.2

Or see this region's nucleotide sequence