Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0146

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0145 and Psest_0146 overlap by 4 nucleotidesPsest_0146 and Psest_0147 are separated by 191 nucleotidesPsest_0147 and Psest_0148 are separated by 88 nucleotides Psest_0145: Psest_0145 - A/G-specific adenine glycosylase, at 143,312 to 144,379 _0145 Psest_0146: Psest_0146 - Uncharacterized protein involved in outer membrane biogenesis, at 144,376 to 146,601 _0146 Psest_0147: Psest_0147 - Acetyltransferase, GNAT family., at 146,793 to 147,191 _0147 Psest_0148: Psest_0148 - nitrate transport ATP-binding subunits C and D, at 147,280 to 148,062 _0148 Position (kb) 144 145 146 147Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 143.407 kb on + strandat 143.408 kb on - strandat 143.409 kb on + strandat 143.409 kb on + strandat 143.409 kb on + strandat 143.410 kb on - strandat 143.410 kb on - strandat 143.410 kb on - strandat 143.410 kb on - strandat 143.841 kb on + strand, within Psest_0145at 143.842 kb on - strand, within Psest_0145at 143.842 kb on - strand, within Psest_0145at 143.937 kb on + strand, within Psest_0145at 143.938 kb on - strand, within Psest_0145at 143.938 kb on - strand, within Psest_0145at 144.133 kb on - strand, within Psest_0145at 144.136 kb on - strand, within Psest_0145at 144.575 kb on + strandat 144.647 kb on + strand, within Psest_0146at 144.647 kb on + strand, within Psest_0146at 145.076 kb on - strand, within Psest_0146at 145.076 kb on - strand, within Psest_0146at 145.076 kb on - strand, within Psest_0146at 145.112 kb on + strand, within Psest_0146at 145.112 kb on + strand, within Psest_0146at 145.113 kb on - strand, within Psest_0146at 145.255 kb on + strand, within Psest_0146at 146.030 kb on + strand, within Psest_0146at 146.031 kb on - strand, within Psest_0146at 146.031 kb on - strand, within Psest_0146at 146.057 kb on + strand, within Psest_0146at 146.058 kb on - strand, within Psest_0146at 146.058 kb on - strand, within Psest_0146at 146.058 kb on - strand, within Psest_0146at 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.499 kb on - strandat 146.499 kb on - strandat 146.499 kb on - strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.616 kb on - strandat 146.616 kb on - strandat 146.616 kb on - strandat 146.642 kb on + strandat 146.643 kb on - strandat 146.643 kb on - strandat 146.644 kb on + strandat 146.644 kb on + strandat 146.644 kb on + strandat 146.795 kb on - strandat 147.087 kb on - strand, within Psest_0147at 147.091 kb on + strand, within Psest_0147at 147.091 kb on + strand, within Psest_0147at 147.092 kb on - strand, within Psest_0147at 147.124 kb on + strand, within Psest_0147at 147.124 kb on + strand, within Psest_0147at 147.124 kb on + strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.145 kb on - strand, within Psest_0147at 147.181 kb on + strandat 147.181 kb on + strandat 147.181 kb on + strandat 147.182 kb on - strandat 147.231 kb on + strandat 147.338 kb on + strandat 147.338 kb on + strandat 147.339 kb on - strandat 147.339 kb on - strandat 147.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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143,407 + +0.9
143,408 - -0.0
143,409 + -0.9
143,409 + -0.8
143,409 + -0.4
143,410 - -0.3
143,410 - +0.8
143,410 - +0.8
143,410 - +0.4
143,841 + Psest_0145 0.50 -1.3
143,842 - Psest_0145 0.50 -0.6
143,842 - Psest_0145 0.50 -0.4
143,937 + Psest_0145 0.59 -0.1
143,938 - Psest_0145 0.59 +0.2
143,938 - Psest_0145 0.59 -2.1
144,133 - Psest_0145 0.77 +0.1
144,136 - Psest_0145 0.77 -0.4
144,575 + -4.4
144,647 + Psest_0146 0.12 -0.4
144,647 + Psest_0146 0.12 -0.3
145,076 - Psest_0146 0.31 -1.5
145,076 - Psest_0146 0.31 -0.8
145,076 - Psest_0146 0.31 -0.9
145,112 + Psest_0146 0.33 -2.4
145,112 + Psest_0146 0.33 -1.6
145,113 - Psest_0146 0.33 -0.6
145,255 + Psest_0146 0.39 -1.6
146,030 + Psest_0146 0.74 -2.6
146,031 - Psest_0146 0.74 -1.2
146,031 - Psest_0146 0.74 -1.6
146,057 + Psest_0146 0.76 -1.3
146,058 - Psest_0146 0.76 -0.8
146,058 - Psest_0146 0.76 -1.2
146,058 - Psest_0146 0.76 -1.2
146,498 + -1.4
146,498 + -0.8
146,498 + -1.4
146,498 + -1.7
146,498 + -0.6
146,498 + -0.4
146,498 + -2.2
146,499 - -1.2
146,499 - -1.4
146,499 - -0.9
146,615 + -1.3
146,615 + -0.7
146,615 + -2.3
146,615 + -0.9
146,615 + +0.2
146,615 + -0.8
146,615 + -1.3
146,615 + -0.6
146,615 + -0.9
146,616 - +0.9
146,616 - -0.3
146,616 - -0.7
146,642 + +0.2
146,643 - +1.0
146,643 - -1.4
146,644 + +0.1
146,644 + +0.6
146,644 + -1.3
146,795 - +0.9
147,087 - Psest_0147 0.74 +1.1
147,091 + Psest_0147 0.75 +0.2
147,091 + Psest_0147 0.75 -3.3
147,092 - Psest_0147 0.75 -0.9
147,124 + Psest_0147 0.83 +1.9
147,124 + Psest_0147 0.83 -0.2
147,124 + Psest_0147 0.83 +1.2
147,125 - Psest_0147 0.83 -2.2
147,125 - Psest_0147 0.83 -0.3
147,125 - Psest_0147 0.83 +0.5
147,125 - Psest_0147 0.83 -1.5
147,125 - Psest_0147 0.83 -0.1
147,125 - Psest_0147 0.83 -0.2
147,145 - Psest_0147 0.88 +0.1
147,181 + -1.3
147,181 + +0.7
147,181 + +0.1
147,182 - +0.3
147,231 + +0.6
147,338 + +0.5
147,338 + +0.1
147,339 - +0.4
147,339 - -1.1
147,339 - -0.1

Or see this region's nucleotide sequence