Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3772

Experiment: Adenine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3771 and Psest_3772 are separated by 115 nucleotidesPsest_3772 and Psest_3773 are separated by 38 nucleotidesPsest_3773 and Psest_3774 are separated by 396 nucleotides Psest_3771: Psest_3771 - probable ammonium transporter, marine subtype, at 3,937,369 to 3,938,619 _3771 Psest_3772: Psest_3772 - ammonium transporter, at 3,938,735 to 3,940,051 _3772 Psest_3773: Psest_3773 - Nitrogen regulatory protein PII, at 3,940,090 to 3,940,428 _3773 Psest_3774: Psest_3774 - Uncharacterized protein conserved in bacteria, at 3,940,825 to 3,941,085 _3774 Position (kb) 3938 3939 3940 3941Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3938.021 kb on + strand, within Psest_3771at 3938.022 kb on - strand, within Psest_3771at 3938.022 kb on - strand, within Psest_3771at 3938.022 kb on - strand, within Psest_3771at 3938.022 kb on - strand, within Psest_3771at 3938.169 kb on - strand, within Psest_3771at 3938.303 kb on + strand, within Psest_3771at 3938.304 kb on - strand, within Psest_3771at 3938.304 kb on - strand, within Psest_3771at 3938.306 kb on + strand, within Psest_3771at 3938.306 kb on + strand, within Psest_3771at 3938.306 kb on + strand, within Psest_3771at 3938.306 kb on + strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.307 kb on - strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.405 kb on + strand, within Psest_3771at 3938.406 kb on - strand, within Psest_3771at 3938.406 kb on - strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.414 kb on + strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.415 kb on - strand, within Psest_3771at 3938.417 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.432 kb on + strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.433 kb on - strand, within Psest_3771at 3938.453 kb on + strand, within Psest_3771at 3938.453 kb on + strand, within Psest_3771at 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.570 kb on + strandat 3938.571 kb on - strandat 3938.571 kb on - strandat 3938.571 kb on - strandat 3938.571 kb on - strandat 3938.571 kb on - strandat 3938.614 kb on - strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.844 kb on + strandat 3938.845 kb on - strandat 3938.862 kb on + strandat 3938.863 kb on - strandat 3938.863 kb on - strandat 3938.863 kb on - strandat 3939.275 kb on - strand, within Psest_3772at 3939.537 kb on + strand, within Psest_3772at 3939.537 kb on + strand, within Psest_3772at 3939.537 kb on + strand, within Psest_3772at 3939.537 kb on + strand, within Psest_3772at 3939.538 kb on - strand, within Psest_3772at 3939.538 kb on - strand, within Psest_3772at 3939.538 kb on - strand, within Psest_3772at 3939.799 kb on - strand, within Psest_3772at 3939.799 kb on - strand, within Psest_3772at 3940.004 kb on + strandat 3940.005 kb on - strandat 3940.005 kb on - strandat 3940.026 kb on - strandat 3940.057 kb on + strandat 3940.058 kb on - strandat 3940.091 kb on + strandat 3940.091 kb on + strandat 3940.092 kb on - strandat 3940.092 kb on - strandat 3940.092 kb on - strandat 3940.092 kb on - strandat 3940.092 kb on - strandat 3940.092 kb on - strandat 3940.791 kb on + strandat 3940.791 kb on + strandat 3940.791 kb on + strandat 3940.791 kb on + strandat 3940.791 kb on + strandat 3940.791 kb on + strandat 3940.791 kb on + strandat 3940.847 kb on + strandat 3940.847 kb on + strandat 3940.847 kb on + strandat 3940.847 kb on + strandat 3940.847 kb on + strandat 3940.847 kb on + strandat 3940.847 kb on + strandat 3940.848 kb on - strandat 3940.937 kb on + strand, within Psest_3774

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
remove
3,938,021 + Psest_3771 0.52 -0.9
3,938,022 - Psest_3771 0.52 +0.1
3,938,022 - Psest_3771 0.52 -0.1
3,938,022 - Psest_3771 0.52 -0.9
3,938,022 - Psest_3771 0.52 -0.2
3,938,169 - Psest_3771 0.64 -0.3
3,938,303 + Psest_3771 0.75 +0.4
3,938,304 - Psest_3771 0.75 -1.1
3,938,304 - Psest_3771 0.75 -3.7
3,938,306 + Psest_3771 0.75 -0.8
3,938,306 + Psest_3771 0.75 +1.0
3,938,306 + Psest_3771 0.75 +0.2
3,938,306 + Psest_3771 0.75 -1.3
3,938,307 - Psest_3771 0.75 -2.1
3,938,307 - Psest_3771 0.75 -1.5
3,938,307 - Psest_3771 0.75 -0.5
3,938,307 - Psest_3771 0.75 -0.2
3,938,307 - Psest_3771 0.75 -1.2
3,938,307 - Psest_3771 0.75 -1.7
3,938,307 - Psest_3771 0.75 -0.5
3,938,405 + Psest_3771 0.83 -0.3
3,938,405 + Psest_3771 0.83 -0.9
3,938,405 + Psest_3771 0.83 +0.6
3,938,405 + Psest_3771 0.83 -0.7
3,938,405 + Psest_3771 0.83 -0.7
3,938,405 + Psest_3771 0.83 +0.4
3,938,405 + Psest_3771 0.83 +0.3
3,938,405 + Psest_3771 0.83 -1.3
3,938,406 - Psest_3771 0.83 -0.5
3,938,406 - Psest_3771 0.83 +0.0
3,938,414 + Psest_3771 0.84 +0.8
3,938,414 + Psest_3771 0.84 -1.1
3,938,414 + Psest_3771 0.84 -0.7
3,938,414 + Psest_3771 0.84 +0.2
3,938,414 + Psest_3771 0.84 -0.0
3,938,414 + Psest_3771 0.84 +1.1
3,938,414 + Psest_3771 0.84 -0.2
3,938,414 + Psest_3771 0.84 +1.3
3,938,414 + Psest_3771 0.84 -0.0
3,938,414 + Psest_3771 0.84 -0.4
3,938,414 + Psest_3771 0.84 +0.5
3,938,414 + Psest_3771 0.84 +0.1
3,938,414 + Psest_3771 0.84 -0.4
3,938,414 + Psest_3771 0.84 +0.3
3,938,414 + Psest_3771 0.84 -0.6
3,938,414 + Psest_3771 0.84 +0.6
3,938,414 + Psest_3771 0.84 +1.7
3,938,414 + Psest_3771 0.84 +0.6
3,938,414 + Psest_3771 0.84 -0.6
3,938,414 + Psest_3771 0.84 -2.7
3,938,415 - Psest_3771 0.84 +0.3
3,938,415 - Psest_3771 0.84 -0.2
3,938,415 - Psest_3771 0.84 +0.1
3,938,415 - Psest_3771 0.84 +0.9
3,938,415 - Psest_3771 0.84 -0.6
3,938,415 - Psest_3771 0.84 -0.4
3,938,415 - Psest_3771 0.84 -0.0
3,938,415 - Psest_3771 0.84 +0.1
3,938,415 - Psest_3771 0.84 -0.7
3,938,415 - Psest_3771 0.84 -0.5
3,938,415 - Psest_3771 0.84 +0.2
3,938,415 - Psest_3771 0.84 -0.7
3,938,415 - Psest_3771 0.84 -1.1
3,938,415 - Psest_3771 0.84 -1.3
3,938,415 - Psest_3771 0.84 -0.4
3,938,415 - Psest_3771 0.84 -1.9
3,938,415 - Psest_3771 0.84 +0.2
3,938,415 - Psest_3771 0.84 -1.5
3,938,415 - Psest_3771 0.84 -0.7
3,938,415 - Psest_3771 0.84 -1.0
3,938,415 - Psest_3771 0.84 -1.5
3,938,415 - Psest_3771 0.84 -1.1
3,938,415 - Psest_3771 0.84 +0.4
3,938,415 - Psest_3771 0.84 -1.1
3,938,415 - Psest_3771 0.84 +0.1
3,938,415 - Psest_3771 0.84 +0.4
3,938,415 - Psest_3771 0.84 -0.0
3,938,415 - Psest_3771 0.84 -1.0
3,938,415 - Psest_3771 0.84 -0.4
3,938,415 - Psest_3771 0.84 +1.0
3,938,415 - Psest_3771 0.84 -0.9
3,938,415 - Psest_3771 0.84 +0.3
3,938,417 + Psest_3771 0.84 +0.2
3,938,432 + Psest_3771 0.85 -0.5
3,938,432 + Psest_3771 0.85 -0.2
3,938,432 + Psest_3771 0.85 +0.2
3,938,432 + Psest_3771 0.85 +0.2
3,938,432 + Psest_3771 0.85 +0.2
3,938,432 + Psest_3771 0.85 -0.5
3,938,432 + Psest_3771 0.85 -2.2
3,938,432 + Psest_3771 0.85 -2.3
3,938,432 + Psest_3771 0.85 +0.5
3,938,432 + Psest_3771 0.85 -0.1
3,938,432 + Psest_3771 0.85 -1.1
3,938,433 - Psest_3771 0.85 +0.2
3,938,433 - Psest_3771 0.85 -0.5
3,938,433 - Psest_3771 0.85 -0.1
3,938,433 - Psest_3771 0.85 +0.7
3,938,433 - Psest_3771 0.85 +0.5
3,938,433 - Psest_3771 0.85 -1.3
3,938,433 - Psest_3771 0.85 +0.0
3,938,433 - Psest_3771 0.85 -0.7
3,938,433 - Psest_3771 0.85 +0.7
3,938,433 - Psest_3771 0.85 +1.1
3,938,433 - Psest_3771 0.85 -0.3
3,938,433 - Psest_3771 0.85 -1.5
3,938,433 - Psest_3771 0.85 -1.2
3,938,453 + Psest_3771 0.87 -0.8
3,938,453 + Psest_3771 0.87 -0.6
3,938,570 + -1.7
3,938,570 + +0.7
3,938,570 + +1.6
3,938,570 + +0.4
3,938,570 + -0.3
3,938,570 + -0.1
3,938,570 + -0.9
3,938,570 + +1.3
3,938,570 + -0.5
3,938,571 - +0.2
3,938,571 - +1.7
3,938,571 - +0.3
3,938,571 - +0.4
3,938,571 - +0.1
3,938,614 - -0.5
3,938,844 + +0.1
3,938,844 + -0.8
3,938,844 + -1.0
3,938,844 + -2.0
3,938,844 + -1.3
3,938,844 + +0.5
3,938,844 + +0.3
3,938,844 + +0.7
3,938,845 - +0.3
3,938,862 + -0.4
3,938,863 - +0.3
3,938,863 - +1.5
3,938,863 - +0.2
3,939,275 - Psest_3772 0.41 +1.0
3,939,537 + Psest_3772 0.61 -0.7
3,939,537 + Psest_3772 0.61 -0.8
3,939,537 + Psest_3772 0.61 -0.0
3,939,537 + Psest_3772 0.61 +2.8
3,939,538 - Psest_3772 0.61 +1.0
3,939,538 - Psest_3772 0.61 +0.9
3,939,538 - Psest_3772 0.61 +1.0
3,939,799 - Psest_3772 0.81 -1.7
3,939,799 - Psest_3772 0.81 -0.5
3,940,004 + +0.4
3,940,005 - -0.5
3,940,005 - -0.0
3,940,026 - -0.4
3,940,057 + -0.6
3,940,058 - -0.5
3,940,091 + +0.7
3,940,091 + +1.5
3,940,092 - +2.9
3,940,092 - +0.9
3,940,092 - +0.7
3,940,092 - +0.2
3,940,092 - +1.7
3,940,092 - +2.7
3,940,791 + +0.1
3,940,791 + +1.8
3,940,791 + +0.4
3,940,791 + +0.2
3,940,791 + +0.9
3,940,791 + -0.1
3,940,791 + +1.5
3,940,847 + -0.5
3,940,847 + +0.1
3,940,847 + -1.5
3,940,847 + -0.2
3,940,847 + -0.6
3,940,847 + -0.6
3,940,847 + -0.2
3,940,848 - +1.5
3,940,937 + Psest_3774 0.43 -0.5

Or see this region's nucleotide sequence