Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3536

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3534 and Psest_3535 are separated by 5 nucleotidesPsest_3535 and Psest_3536 are separated by 107 nucleotidesPsest_3536 and Psest_3537 are separated by 119 nucleotidesPsest_3537 and Psest_3538 overlap by 16 nucleotides Psest_3534: Psest_3534 - Signal transduction histidine kinase, at 3,712,513 to 3,713,829 _3534 Psest_3535: Psest_3535 - hypothetical protein, at 3,713,835 to 3,714,050 _3535 Psest_3536: Psest_3536 - hypothetical protein, at 3,714,158 to 3,714,256 _3536 Psest_3537: Psest_3537 - hypothetical protein, at 3,714,376 to 3,715,248 _3537 Psest_3538: Psest_3538 - hypothetical protein, at 3,715,233 to 3,716,282 _3538 Position (kb) 3714 3715Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3713.268 kb on - strand, within Psest_3534at 3713.890 kb on - strand, within Psest_3535at 3713.890 kb on - strand, within Psest_3535at 3713.902 kb on - strand, within Psest_3535at 3714.020 kb on + strand, within Psest_3535at 3714.061 kb on + strandat 3714.061 kb on + strandat 3714.061 kb on + strandat 3714.061 kb on + strandat 3714.092 kb on + strandat 3714.092 kb on + strandat 3714.092 kb on + strandat 3714.180 kb on + strand, within Psest_3536at 3714.181 kb on - strand, within Psest_3536at 3714.303 kb on + strandat 3714.306 kb on - strandat 3714.310 kb on - strandat 3714.349 kb on + strandat 3714.349 kb on + strandat 3714.349 kb on + strandat 3714.535 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.569 kb on - strand, within Psest_3537at 3714.569 kb on - strand, within Psest_3537at 3714.722 kb on + strand, within Psest_3537at 3714.758 kb on + strand, within Psest_3537at 3714.758 kb on + strand, within Psest_3537at 3714.759 kb on - strand, within Psest_3537at 3714.811 kb on + strand, within Psest_3537at 3715.107 kb on - strand, within Psest_3537at 3715.138 kb on + strand, within Psest_3537at 3715.138 kb on + strand, within Psest_3537at 3715.138 kb on + strand, within Psest_3537at 3715.139 kb on - strand, within Psest_3537at 3715.240 kb on + strandat 3715.240 kb on + strandat 3715.240 kb on + strandat 3715.240 kb on + strandat 3715.241 kb on - strandat 3715.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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3,713,268 - Psest_3534 0.57 +0.2
3,713,890 - Psest_3535 0.25 +0.6
3,713,890 - Psest_3535 0.25 -0.1
3,713,902 - Psest_3535 0.31 +0.5
3,714,020 + Psest_3535 0.86 +0.9
3,714,061 + +0.8
3,714,061 + +0.2
3,714,061 + -0.5
3,714,061 + -0.3
3,714,092 + -0.1
3,714,092 + -0.6
3,714,092 + -0.0
3,714,180 + Psest_3536 0.22 +0.4
3,714,181 - Psest_3536 0.23 +1.1
3,714,303 + -0.0
3,714,306 - -2.6
3,714,310 - +0.2
3,714,349 + +0.3
3,714,349 + -0.2
3,714,349 + +0.2
3,714,535 + Psest_3537 0.18 -2.3
3,714,568 + Psest_3537 0.22 +0.8
3,714,568 + Psest_3537 0.22 -0.3
3,714,568 + Psest_3537 0.22 -0.5
3,714,568 + Psest_3537 0.22 -0.8
3,714,568 + Psest_3537 0.22 +0.5
3,714,568 + Psest_3537 0.22 +0.1
3,714,568 + Psest_3537 0.22 -1.1
3,714,569 - Psest_3537 0.22 -0.2
3,714,569 - Psest_3537 0.22 -1.4
3,714,722 + Psest_3537 0.40 -0.6
3,714,758 + Psest_3537 0.44 +0.8
3,714,758 + Psest_3537 0.44 -1.8
3,714,759 - Psest_3537 0.44 +1.7
3,714,811 + Psest_3537 0.50 +0.2
3,715,107 - Psest_3537 0.84 +0.2
3,715,138 + Psest_3537 0.87 -3.9
3,715,138 + Psest_3537 0.87 -0.6
3,715,138 + Psest_3537 0.87 +0.1
3,715,139 - Psest_3537 0.87 +0.5
3,715,240 + +1.0
3,715,240 + -1.8
3,715,240 + -0.5
3,715,240 + +1.5
3,715,241 - -1.0
3,715,241 - +0.3

Or see this region's nucleotide sequence