Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3534 and Psest_3535 are separated by 5 nucleotides Psest_3535 and Psest_3536 are separated by 107 nucleotides Psest_3536 and Psest_3537 are separated by 119 nucleotides Psest_3537 and Psest_3538 overlap by 16 nucleotides
Psest_3534: Psest_3534 - Signal transduction histidine kinase, at 3,712,513 to 3,713,829
_3534
Psest_3535: Psest_3535 - hypothetical protein, at 3,713,835 to 3,714,050
_3535
Psest_3536: Psest_3536 - hypothetical protein, at 3,714,158 to 3,714,256
_3536
Psest_3537: Psest_3537 - hypothetical protein, at 3,714,376 to 3,715,248
_3537
Psest_3538: Psest_3538 - hypothetical protein, at 3,715,233 to 3,716,282
_3538
Position (kb)
3714
3715 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3713.268 kb on - strand, within Psest_3534 at 3713.890 kb on - strand, within Psest_3535 at 3713.890 kb on - strand, within Psest_3535 at 3713.902 kb on - strand, within Psest_3535 at 3714.020 kb on + strand, within Psest_3535 at 3714.061 kb on + strand at 3714.061 kb on + strand at 3714.061 kb on + strand at 3714.061 kb on + strand at 3714.092 kb on + strand at 3714.092 kb on + strand at 3714.092 kb on + strand at 3714.180 kb on + strand, within Psest_3536 at 3714.181 kb on - strand, within Psest_3536 at 3714.303 kb on + strand at 3714.306 kb on - strand at 3714.310 kb on - strand at 3714.349 kb on + strand at 3714.349 kb on + strand at 3714.349 kb on + strand at 3714.535 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.569 kb on - strand, within Psest_3537 at 3714.569 kb on - strand, within Psest_3537 at 3714.722 kb on + strand, within Psest_3537 at 3714.758 kb on + strand, within Psest_3537 at 3714.758 kb on + strand, within Psest_3537 at 3714.759 kb on - strand, within Psest_3537 at 3714.811 kb on + strand, within Psest_3537 at 3715.107 kb on - strand, within Psest_3537 at 3715.138 kb on + strand, within Psest_3537 at 3715.138 kb on + strand, within Psest_3537 at 3715.138 kb on + strand, within Psest_3537 at 3715.139 kb on - strand, within Psest_3537 at 3715.240 kb on + strand at 3715.240 kb on + strand at 3715.240 kb on + strand at 3715.240 kb on + strand at 3715.241 kb on - strand at 3715.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 3,713,268 - Psest_3534 0.57 +0.2 3,713,890 - Psest_3535 0.25 +0.6 3,713,890 - Psest_3535 0.25 -0.1 3,713,902 - Psest_3535 0.31 +0.5 3,714,020 + Psest_3535 0.86 +0.9 3,714,061 + +0.8 3,714,061 + +0.2 3,714,061 + -0.5 3,714,061 + -0.3 3,714,092 + -0.1 3,714,092 + -0.6 3,714,092 + -0.0 3,714,180 + Psest_3536 0.22 +0.4 3,714,181 - Psest_3536 0.23 +1.1 3,714,303 + -0.0 3,714,306 - -2.6 3,714,310 - +0.2 3,714,349 + +0.3 3,714,349 + -0.2 3,714,349 + +0.2 3,714,535 + Psest_3537 0.18 -2.3 3,714,568 + Psest_3537 0.22 +0.8 3,714,568 + Psest_3537 0.22 -0.3 3,714,568 + Psest_3537 0.22 -0.5 3,714,568 + Psest_3537 0.22 -0.8 3,714,568 + Psest_3537 0.22 +0.5 3,714,568 + Psest_3537 0.22 +0.1 3,714,568 + Psest_3537 0.22 -1.1 3,714,569 - Psest_3537 0.22 -0.2 3,714,569 - Psest_3537 0.22 -1.4 3,714,722 + Psest_3537 0.40 -0.6 3,714,758 + Psest_3537 0.44 +0.8 3,714,758 + Psest_3537 0.44 -1.8 3,714,759 - Psest_3537 0.44 +1.7 3,714,811 + Psest_3537 0.50 +0.2 3,715,107 - Psest_3537 0.84 +0.2 3,715,138 + Psest_3537 0.87 -3.9 3,715,138 + Psest_3537 0.87 -0.6 3,715,138 + Psest_3537 0.87 +0.1 3,715,139 - Psest_3537 0.87 +0.5 3,715,240 + +1.0 3,715,240 + -1.8 3,715,240 + -0.5 3,715,240 + +1.5 3,715,241 - -1.0 3,715,241 - +0.3
Or see this region's nucleotide sequence