Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3533

Experiment: Adenine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3530 and Psest_3531 are separated by 170 nucleotidesPsest_3531 and Psest_3532 are separated by 8 nucleotidesPsest_3532 and Psest_3533 overlap by 1 nucleotidesPsest_3533 and Psest_3534 overlap by 4 nucleotides Psest_3530: Psest_3530 - Copper binding periplasmic protein CusF., at 3,710,702 to 3,711,058 _3530 Psest_3531: Psest_3531 - Peptidase propeptide and YPEB domain., at 3,711,229 to 3,711,537 _3531 Psest_3532: Psest_3532 - Peptidase propeptide and YPEB domain., at 3,711,546 to 3,711,851 _3532 Psest_3533: Psest_3533 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 3,711,851 to 3,712,516 _3533 Psest_3534: Psest_3534 - Signal transduction histidine kinase, at 3,712,513 to 3,713,829 _3534 Position (kb) 3711 3712 3713Strain fitness (log2 ratio) -2 -1 0 1 2at 3711.097 kb on - strandat 3711.102 kb on + strandat 3711.102 kb on + strandat 3711.102 kb on + strandat 3711.102 kb on + strandat 3711.102 kb on + strandat 3711.102 kb on + strandat 3711.102 kb on + strandat 3711.103 kb on - strandat 3711.103 kb on - strandat 3711.103 kb on - strandat 3711.105 kb on + strandat 3711.106 kb on - strandat 3711.106 kb on - strandat 3711.106 kb on - strandat 3711.106 kb on - strandat 3711.163 kb on + strandat 3711.164 kb on - strandat 3711.164 kb on - strandat 3711.243 kb on + strandat 3711.243 kb on + strandat 3711.243 kb on + strandat 3711.244 kb on - strandat 3711.442 kb on + strand, within Psest_3531at 3711.442 kb on + strand, within Psest_3531at 3711.442 kb on + strand, within Psest_3531at 3711.750 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.962 kb on + strand, within Psest_3533at 3711.984 kb on - strand, within Psest_3533at 3712.142 kb on + strand, within Psest_3533at 3712.143 kb on - strand, within Psest_3533at 3712.332 kb on - strand, within Psest_3533at 3712.388 kb on + strand, within Psest_3533at 3713.268 kb on - strand, within Psest_3534

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
remove
3,711,097 - -0.0
3,711,102 + +1.4
3,711,102 + +1.2
3,711,102 + -0.1
3,711,102 + +0.1
3,711,102 + +0.2
3,711,102 + +0.1
3,711,102 + -1.7
3,711,103 - -0.9
3,711,103 - -0.6
3,711,103 - +0.4
3,711,105 + +0.1
3,711,106 - -0.1
3,711,106 - -0.8
3,711,106 - -1.6
3,711,106 - +0.3
3,711,163 + +0.8
3,711,164 - -0.5
3,711,164 - -0.1
3,711,243 + -2.7
3,711,243 + -0.2
3,711,243 + -0.2
3,711,244 - -0.9
3,711,442 + Psest_3531 0.69 +0.5
3,711,442 + Psest_3531 0.69 +1.7
3,711,442 + Psest_3531 0.69 +1.5
3,711,750 - Psest_3532 0.67 -0.2
3,711,754 - Psest_3532 0.68 +2.2
3,711,754 - Psest_3532 0.68 +1.2
3,711,754 - Psest_3532 0.68 -0.6
3,711,754 - Psest_3532 0.68 -0.4
3,711,754 - Psest_3532 0.68 +1.2
3,711,754 - Psest_3532 0.68 +0.5
3,711,754 - Psest_3532 0.68 +0.1
3,711,754 - Psest_3532 0.68 +0.1
3,711,754 - Psest_3532 0.68 -0.3
3,711,754 - Psest_3532 0.68 -0.8
3,711,754 - Psest_3532 0.68 -0.3
3,711,754 - Psest_3532 0.68 +0.8
3,711,754 - Psest_3532 0.68 -1.5
3,711,754 - Psest_3532 0.68 -0.1
3,711,754 - Psest_3532 0.68 -1.3
3,711,754 - Psest_3532 0.68 -0.2
3,711,754 - Psest_3532 0.68 +0.2
3,711,754 - Psest_3532 0.68 +0.0
3,711,754 - Psest_3532 0.68 -1.8
3,711,754 - Psest_3532 0.68 -1.1
3,711,754 - Psest_3532 0.68 -0.2
3,711,962 + Psest_3533 0.17 +0.1
3,711,984 - Psest_3533 0.20 +1.3
3,712,142 + Psest_3533 0.44 +0.2
3,712,143 - Psest_3533 0.44 +0.4
3,712,332 - Psest_3533 0.72 +0.2
3,712,388 + Psest_3533 0.81 +0.7
3,713,268 - Psest_3534 0.57 +0.2

Or see this region's nucleotide sequence