Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3077

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3076 and Psest_3077 are separated by 228 nucleotidesPsest_3077 and Psest_3078 are separated by 113 nucleotides Psest_3076: Psest_3076 - Outer membrane receptor proteins, mostly Fe transport, at 3,252,934 to 3,254,949 _3076 Psest_3077: Psest_3077 - Protein of unknown function (DUF3203)., at 3,255,178 to 3,255,402 _3077 Psest_3078: Psest_3078 - L-proline:Na+ symporter (from data), at 3,255,516 to 3,257,000 _3078 Position (kb) 3255 3256Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3254.225 kb on + strand, within Psest_3076at 3254.226 kb on - strand, within Psest_3076at 3254.226 kb on - strand, within Psest_3076at 3254.240 kb on + strand, within Psest_3076at 3254.240 kb on + strand, within Psest_3076at 3254.294 kb on + strand, within Psest_3076at 3254.294 kb on + strand, within Psest_3076at 3254.295 kb on - strand, within Psest_3076at 3254.460 kb on - strand, within Psest_3076at 3254.534 kb on + strand, within Psest_3076at 3255.082 kb on - strandat 3255.086 kb on + strandat 3255.086 kb on + strandat 3255.087 kb on - strandat 3255.087 kb on - strandat 3255.087 kb on - strandat 3255.186 kb on - strandat 3255.186 kb on - strandat 3255.234 kb on + strand, within Psest_3077at 3255.234 kb on + strand, within Psest_3077at 3255.234 kb on + strand, within Psest_3077at 3255.235 kb on - strand, within Psest_3077at 3255.235 kb on - strand, within Psest_3077at 3255.606 kb on - strandat 3255.929 kb on - strand, within Psest_3078at 3255.929 kb on - strand, within Psest_3078at 3255.929 kb on - strand, within Psest_3078at 3255.929 kb on - strand, within Psest_3078at 3255.929 kb on - strand, within Psest_3078at 3255.981 kb on - strand, within Psest_3078at 3256.117 kb on + strand, within Psest_3078at 3256.117 kb on + strand, within Psest_3078

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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3,254,225 + Psest_3076 0.64 -0.1
3,254,226 - Psest_3076 0.64 +0.3
3,254,226 - Psest_3076 0.64 -0.3
3,254,240 + Psest_3076 0.65 -0.4
3,254,240 + Psest_3076 0.65 -1.3
3,254,294 + Psest_3076 0.67 +0.1
3,254,294 + Psest_3076 0.67 -1.2
3,254,295 - Psest_3076 0.68 +1.2
3,254,460 - Psest_3076 0.76 +0.0
3,254,534 + Psest_3076 0.79 +0.7
3,255,082 - +0.8
3,255,086 + +1.0
3,255,086 + -0.2
3,255,087 - -0.6
3,255,087 - +0.2
3,255,087 - -0.5
3,255,186 - -2.1
3,255,186 - +0.4
3,255,234 + Psest_3077 0.25 +0.2
3,255,234 + Psest_3077 0.25 -0.1
3,255,234 + Psest_3077 0.25 +1.1
3,255,235 - Psest_3077 0.25 +0.2
3,255,235 - Psest_3077 0.25 +3.1
3,255,606 - +0.5
3,255,929 - Psest_3078 0.28 +0.7
3,255,929 - Psest_3078 0.28 +0.8
3,255,929 - Psest_3078 0.28 +1.0
3,255,929 - Psest_3078 0.28 +2.0
3,255,929 - Psest_3078 0.28 -0.1
3,255,981 - Psest_3078 0.31 +0.4
3,256,117 + Psest_3078 0.40 -1.3
3,256,117 + Psest_3078 0.40 +0.2

Or see this region's nucleotide sequence