Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3039

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3038 and Psest_3039 are separated by 198 nucleotidesPsest_3039 and Psest_3040 are separated by 49 nucleotidesPsest_3040 and Psest_3041 overlap by 1 nucleotides Psest_3038: Psest_3038 - Arabinose efflux permease, at 3,221,247 to 3,222,425 _3038 Psest_3039: Psest_3039 - periplasmic nitrate reductase, NapE protein, at 3,222,624 to 3,222,803 _3039 Psest_3040: Psest_3040 - Uncharacterized protein involved in formation of periplasmic nitrate reductase, at 3,222,853 to 3,223,107 _3040 Psest_3041: Psest_3041 - periplasmic nitrate reductase, large subunit, at 3,223,107 to 3,225,611 _3041 Position (kb) 3222 3223Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3221.633 kb on - strand, within Psest_3038at 3221.704 kb on + strand, within Psest_3038at 3221.704 kb on + strand, within Psest_3038at 3221.704 kb on + strand, within Psest_3038at 3221.704 kb on + strand, within Psest_3038at 3221.704 kb on + strand, within Psest_3038at 3221.704 kb on + strand, within Psest_3038at 3221.705 kb on - strand, within Psest_3038at 3221.705 kb on - strand, within Psest_3038at 3221.705 kb on - strand, within Psest_3038at 3221.705 kb on - strand, within Psest_3038at 3221.705 kb on - strand, within Psest_3038at 3221.807 kb on + strand, within Psest_3038at 3221.807 kb on + strand, within Psest_3038at 3221.808 kb on - strand, within Psest_3038at 3221.988 kb on - strand, within Psest_3038at 3221.989 kb on + strand, within Psest_3038at 3221.989 kb on + strand, within Psest_3038at 3221.989 kb on + strand, within Psest_3038at 3221.989 kb on + strand, within Psest_3038at 3221.989 kb on + strand, within Psest_3038at 3221.989 kb on + strand, within Psest_3038at 3221.989 kb on + strand, within Psest_3038at 3221.989 kb on + strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3221.990 kb on - strand, within Psest_3038at 3222.040 kb on + strand, within Psest_3038at 3222.040 kb on + strand, within Psest_3038at 3222.040 kb on + strand, within Psest_3038at 3222.041 kb on - strand, within Psest_3038at 3222.041 kb on - strand, within Psest_3038at 3222.041 kb on - strand, within Psest_3038at 3222.041 kb on - strand, within Psest_3038at 3222.041 kb on - strand, within Psest_3038at 3222.041 kb on - strand, within Psest_3038at 3222.216 kb on - strand, within Psest_3038at 3222.326 kb on - strandat 3222.326 kb on - strandat 3222.326 kb on - strandat 3222.326 kb on - strandat 3222.383 kb on - strandat 3222.534 kb on + strandat 3222.592 kb on + strandat 3222.659 kb on + strand, within Psest_3039at 3222.659 kb on + strand, within Psest_3039at 3222.660 kb on - strand, within Psest_3039at 3222.837 kb on - strandat 3222.847 kb on + strandat 3222.848 kb on - strandat 3222.917 kb on + strand, within Psest_3040at 3222.935 kb on + strand, within Psest_3040at 3222.935 kb on + strand, within Psest_3040at 3222.935 kb on + strand, within Psest_3040at 3222.935 kb on + strand, within Psest_3040at 3222.935 kb on + strand, within Psest_3040at 3222.935 kb on + strand, within Psest_3040at 3222.936 kb on - strand, within Psest_3040at 3223.060 kb on - strand, within Psest_3040at 3223.060 kb on - strand, within Psest_3040at 3223.060 kb on - strand, within Psest_3040at 3223.060 kb on - strand, within Psest_3040at 3223.075 kb on + strand, within Psest_3040at 3223.076 kb on - strand, within Psest_3040at 3223.076 kb on - strand, within Psest_3040at 3223.153 kb on + strandat 3223.154 kb on - strandat 3223.154 kb on - strandat 3223.365 kb on + strand, within Psest_3041at 3223.366 kb on - strand, within Psest_3041at 3223.366 kb on - strand, within Psest_3041at 3223.366 kb on - strand, within Psest_3041at 3223.366 kb on - strand, within Psest_3041at 3223.386 kb on + strand, within Psest_3041at 3223.387 kb on - strand, within Psest_3041at 3223.387 kb on - strand, within Psest_3041at 3223.417 kb on + strand, within Psest_3041at 3223.417 kb on + strand, within Psest_3041at 3223.417 kb on + strand, within Psest_3041at 3223.503 kb on + strand, within Psest_3041at 3223.503 kb on + strand, within Psest_3041at 3223.503 kb on + strand, within Psest_3041at 3223.503 kb on + strand, within Psest_3041at 3223.504 kb on - strand, within Psest_3041at 3223.504 kb on - strand, within Psest_3041at 3223.504 kb on - strand, within Psest_3041at 3223.504 kb on - strand, within Psest_3041at 3223.504 kb on - strand, within Psest_3041at 3223.710 kb on + strand, within Psest_3041at 3223.710 kb on + strand, within Psest_3041at 3223.711 kb on - strand, within Psest_3041

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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3,221,633 - Psest_3038 0.33 +0.0
3,221,704 + Psest_3038 0.39 -0.4
3,221,704 + Psest_3038 0.39 -1.4
3,221,704 + Psest_3038 0.39 +0.6
3,221,704 + Psest_3038 0.39 +2.4
3,221,704 + Psest_3038 0.39 -0.5
3,221,704 + Psest_3038 0.39 -0.6
3,221,705 - Psest_3038 0.39 +0.1
3,221,705 - Psest_3038 0.39 +0.0
3,221,705 - Psest_3038 0.39 -0.1
3,221,705 - Psest_3038 0.39 +1.0
3,221,705 - Psest_3038 0.39 +0.9
3,221,807 + Psest_3038 0.47 -0.6
3,221,807 + Psest_3038 0.47 +0.5
3,221,808 - Psest_3038 0.48 +0.4
3,221,988 - Psest_3038 0.63 +0.2
3,221,989 + Psest_3038 0.63 +0.2
3,221,989 + Psest_3038 0.63 +1.1
3,221,989 + Psest_3038 0.63 -0.0
3,221,989 + Psest_3038 0.63 +0.2
3,221,989 + Psest_3038 0.63 +0.0
3,221,989 + Psest_3038 0.63 +1.6
3,221,989 + Psest_3038 0.63 +1.5
3,221,989 + Psest_3038 0.63 +0.2
3,221,990 - Psest_3038 0.63 +0.5
3,221,990 - Psest_3038 0.63 +0.4
3,221,990 - Psest_3038 0.63 -1.0
3,221,990 - Psest_3038 0.63 +0.0
3,221,990 - Psest_3038 0.63 -1.2
3,221,990 - Psest_3038 0.63 -3.0
3,221,990 - Psest_3038 0.63 -1.2
3,221,990 - Psest_3038 0.63 +0.7
3,221,990 - Psest_3038 0.63 -0.1
3,221,990 - Psest_3038 0.63 -0.1
3,221,990 - Psest_3038 0.63 +1.0
3,221,990 - Psest_3038 0.63 +0.6
3,221,990 - Psest_3038 0.63 -0.0
3,221,990 - Psest_3038 0.63 -1.1
3,222,040 + Psest_3038 0.67 -0.5
3,222,040 + Psest_3038 0.67 -0.4
3,222,040 + Psest_3038 0.67 +2.1
3,222,041 - Psest_3038 0.67 +0.2
3,222,041 - Psest_3038 0.67 +0.1
3,222,041 - Psest_3038 0.67 -2.9
3,222,041 - Psest_3038 0.67 +0.9
3,222,041 - Psest_3038 0.67 +0.7
3,222,041 - Psest_3038 0.67 +1.0
3,222,216 - Psest_3038 0.82 -1.0
3,222,326 - +0.0
3,222,326 - -0.1
3,222,326 - -0.5
3,222,326 - -0.5
3,222,383 - +0.3
3,222,534 + +0.3
3,222,592 + -1.1
3,222,659 + Psest_3039 0.19 +0.1
3,222,659 + Psest_3039 0.19 +0.6
3,222,660 - Psest_3039 0.20 +1.2
3,222,837 - -0.2
3,222,847 + -0.3
3,222,848 - -0.4
3,222,917 + Psest_3040 0.25 -0.6
3,222,935 + Psest_3040 0.32 -0.1
3,222,935 + Psest_3040 0.32 -0.3
3,222,935 + Psest_3040 0.32 +0.0
3,222,935 + Psest_3040 0.32 +1.0
3,222,935 + Psest_3040 0.32 +0.4
3,222,935 + Psest_3040 0.32 +0.1
3,222,936 - Psest_3040 0.33 +0.3
3,223,060 - Psest_3040 0.81 -0.6
3,223,060 - Psest_3040 0.81 +1.3
3,223,060 - Psest_3040 0.81 -0.5
3,223,060 - Psest_3040 0.81 -0.4
3,223,075 + Psest_3040 0.87 +0.2
3,223,076 - Psest_3040 0.87 +0.3
3,223,076 - Psest_3040 0.87 -0.5
3,223,153 + +0.7
3,223,154 - +0.4
3,223,154 - -2.8
3,223,365 + Psest_3041 0.10 -0.6
3,223,366 - Psest_3041 0.10 -1.2
3,223,366 - Psest_3041 0.10 -0.0
3,223,366 - Psest_3041 0.10 +1.4
3,223,366 - Psest_3041 0.10 -0.6
3,223,386 + Psest_3041 0.11 -1.0
3,223,387 - Psest_3041 0.11 -0.2
3,223,387 - Psest_3041 0.11 +0.6
3,223,417 + Psest_3041 0.12 +0.2
3,223,417 + Psest_3041 0.12 +0.0
3,223,417 + Psest_3041 0.12 +0.2
3,223,503 + Psest_3041 0.16 +1.1
3,223,503 + Psest_3041 0.16 +0.9
3,223,503 + Psest_3041 0.16 +0.8
3,223,503 + Psest_3041 0.16 -0.4
3,223,504 - Psest_3041 0.16 -1.1
3,223,504 - Psest_3041 0.16 -1.5
3,223,504 - Psest_3041 0.16 +1.1
3,223,504 - Psest_3041 0.16 +0.3
3,223,504 - Psest_3041 0.16 +1.4
3,223,710 + Psest_3041 0.24 +0.5
3,223,710 + Psest_3041 0.24 -1.0
3,223,711 - Psest_3041 0.24 -0.5

Or see this region's nucleotide sequence