Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2434

Experiment: Adenine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2433 and Psest_2434 are separated by 65 nucleotidesPsest_2434 and Psest_2435 are separated by 121 nucleotides Psest_2433: Psest_2433 - alpha-glucan phosphorylases, at 2,599,835 to 2,602,345 _2433 Psest_2434: Psest_2434 - Protein of unknown function (DUF2892)., at 2,602,411 to 2,602,764 _2434 Psest_2435: Psest_2435 - Transcriptional regulator, at 2,602,886 to 2,603,776 _2435 Position (kb) 2602 2603Strain fitness (log2 ratio) -2 -1 0 1 2at 2601.417 kb on - strand, within Psest_2433at 2601.545 kb on + strand, within Psest_2433at 2601.546 kb on - strand, within Psest_2433at 2601.551 kb on - strand, within Psest_2433at 2601.702 kb on - strand, within Psest_2433at 2601.738 kb on + strand, within Psest_2433at 2601.738 kb on + strand, within Psest_2433at 2601.739 kb on - strand, within Psest_2433at 2601.818 kb on + strand, within Psest_2433at 2601.818 kb on + strand, within Psest_2433at 2601.818 kb on + strand, within Psest_2433at 2601.818 kb on + strand, within Psest_2433at 2601.819 kb on - strand, within Psest_2433at 2601.819 kb on - strand, within Psest_2433at 2601.819 kb on - strand, within Psest_2433at 2601.819 kb on - strand, within Psest_2433at 2601.819 kb on - strand, within Psest_2433at 2601.923 kb on + strand, within Psest_2433at 2601.923 kb on + strand, within Psest_2433at 2601.938 kb on + strand, within Psest_2433at 2601.938 kb on + strand, within Psest_2433at 2602.031 kb on + strand, within Psest_2433at 2602.031 kb on + strand, within Psest_2433at 2602.242 kb on + strandat 2602.243 kb on - strandat 2602.265 kb on + strandat 2602.266 kb on - strandat 2602.266 kb on - strandat 2602.380 kb on + strandat 2602.380 kb on + strandat 2602.380 kb on + strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.381 kb on - strandat 2602.382 kb on + strandat 2602.382 kb on + strandat 2602.395 kb on + strandat 2602.395 kb on + strandat 2602.494 kb on - strand, within Psest_2434at 2602.656 kb on + strand, within Psest_2434at 2602.656 kb on + strand, within Psest_2434at 2602.656 kb on + strand, within Psest_2434at 2602.884 kb on - strandat 2602.887 kb on + strandat 2602.887 kb on + strandat 2602.888 kb on - strandat 2602.888 kb on - strandat 2602.888 kb on - strandat 2602.936 kb on - strandat 2603.205 kb on + strand, within Psest_2435at 2603.205 kb on + strand, within Psest_2435at 2603.206 kb on - strand, within Psest_2435at 2603.206 kb on - strand, within Psest_2435at 2603.206 kb on - strand, within Psest_2435at 2603.268 kb on + strand, within Psest_2435at 2603.268 kb on + strand, within Psest_2435at 2603.269 kb on - strand, within Psest_2435at 2603.283 kb on + strand, within Psest_2435at 2603.283 kb on + strand, within Psest_2435at 2603.284 kb on - strand, within Psest_2435at 2603.284 kb on - strand, within Psest_2435at 2603.284 kb on - strand, within Psest_2435at 2603.284 kb on - strand, within Psest_2435at 2603.614 kb on - strand, within Psest_2435at 2603.754 kb on + strandat 2603.754 kb on + strandat 2603.755 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
remove
2,601,417 - Psest_2433 0.63 +2.0
2,601,545 + Psest_2433 0.68 -1.1
2,601,546 - Psest_2433 0.68 -0.3
2,601,551 - Psest_2433 0.68 +0.3
2,601,702 - Psest_2433 0.74 +0.3
2,601,738 + Psest_2433 0.76 -0.6
2,601,738 + Psest_2433 0.76 +0.2
2,601,739 - Psest_2433 0.76 -0.2
2,601,818 + Psest_2433 0.79 +0.2
2,601,818 + Psest_2433 0.79 -1.2
2,601,818 + Psest_2433 0.79 -0.2
2,601,818 + Psest_2433 0.79 -1.8
2,601,819 - Psest_2433 0.79 +0.0
2,601,819 - Psest_2433 0.79 +0.0
2,601,819 - Psest_2433 0.79 -0.3
2,601,819 - Psest_2433 0.79 +0.5
2,601,819 - Psest_2433 0.79 +0.7
2,601,923 + Psest_2433 0.83 +0.0
2,601,923 + Psest_2433 0.83 +0.3
2,601,938 + Psest_2433 0.84 +0.2
2,601,938 + Psest_2433 0.84 -0.1
2,602,031 + Psest_2433 0.87 -1.1
2,602,031 + Psest_2433 0.87 -0.2
2,602,242 + -0.1
2,602,243 - +0.5
2,602,265 + +0.9
2,602,266 - -0.2
2,602,266 - +0.5
2,602,380 + +0.2
2,602,380 + -0.8
2,602,380 + -0.3
2,602,381 - +0.7
2,602,381 - +1.0
2,602,381 - +0.4
2,602,381 - +0.7
2,602,381 - +0.5
2,602,381 - +0.5
2,602,381 - +0.2
2,602,381 - +0.7
2,602,381 - +1.0
2,602,381 - +1.1
2,602,381 - -2.4
2,602,381 - +0.1
2,602,381 - +1.1
2,602,381 - -0.1
2,602,381 - +0.7
2,602,381 - +0.9
2,602,381 - +0.1
2,602,381 - -1.3
2,602,382 + +0.1
2,602,382 + +0.3
2,602,395 + -0.2
2,602,395 + +0.0
2,602,494 - Psest_2434 0.23 +0.8
2,602,656 + Psest_2434 0.69 +0.9
2,602,656 + Psest_2434 0.69 +0.9
2,602,656 + Psest_2434 0.69 -0.6
2,602,884 - -0.1
2,602,887 + -0.0
2,602,887 + -0.4
2,602,888 - +1.1
2,602,888 - +0.1
2,602,888 - +0.5
2,602,936 - -0.8
2,603,205 + Psest_2435 0.36 +1.0
2,603,205 + Psest_2435 0.36 +0.2
2,603,206 - Psest_2435 0.36 -0.8
2,603,206 - Psest_2435 0.36 -0.1
2,603,206 - Psest_2435 0.36 -0.7
2,603,268 + Psest_2435 0.43 +1.3
2,603,268 + Psest_2435 0.43 +0.9
2,603,269 - Psest_2435 0.43 +0.5
2,603,283 + Psest_2435 0.45 +0.4
2,603,283 + Psest_2435 0.45 +0.3
2,603,284 - Psest_2435 0.45 -0.4
2,603,284 - Psest_2435 0.45 +0.1
2,603,284 - Psest_2435 0.45 -0.5
2,603,284 - Psest_2435 0.45 -0.3
2,603,614 - Psest_2435 0.82 +0.2
2,603,754 + +0.5
2,603,754 + +0.3
2,603,755 - +0.3

Or see this region's nucleotide sequence