Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2135

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2134 and Psest_2135 are separated by 87 nucleotidesPsest_2135 and Psest_2136 are separated by 271 nucleotides Psest_2134: Psest_2134 - amino acid carrier protein, at 2,270,200 to 2,271,543 _2134 Psest_2135: Psest_2135 - Peroxiredoxin, at 2,271,631 to 2,272,131 _2135 Psest_2136: Psest_2136 - Predicted homoserine dehydrogenase, at 2,272,403 to 2,273,635 _2136 Position (kb) 2271 2272 2273Strain fitness (log2 ratio) -2 -1 0 1at 2270.895 kb on - strand, within Psest_2134at 2271.095 kb on + strand, within Psest_2134at 2271.095 kb on + strand, within Psest_2134at 2271.297 kb on + strand, within Psest_2134at 2271.317 kb on - strand, within Psest_2134at 2271.317 kb on - strand, within Psest_2134at 2271.317 kb on - strand, within Psest_2134at 2271.526 kb on + strandat 2271.527 kb on - strandat 2271.537 kb on + strandat 2271.537 kb on + strandat 2271.537 kb on + strandat 2271.538 kb on - strandat 2271.538 kb on - strandat 2271.538 kb on - strandat 2271.873 kb on + strand, within Psest_2135at 2271.874 kb on - strand, within Psest_2135at 2271.980 kb on - strand, within Psest_2135at 2271.980 kb on - strand, within Psest_2135at 2271.980 kb on - strand, within Psest_2135at 2272.169 kb on + strandat 2272.265 kb on + strandat 2272.268 kb on + strandat 2272.268 kb on + strandat 2272.268 kb on + strandat 2272.268 kb on + strandat 2272.269 kb on - strandat 2272.269 kb on - strandat 2272.333 kb on - strandat 2272.373 kb on - strandat 2272.402 kb on + strandat 2272.402 kb on + strandat 2272.402 kb on + strandat 2272.403 kb on - strandat 2272.403 kb on - strandat 2272.403 kb on - strandat 2272.408 kb on + strandat 2272.408 kb on + strandat 2272.408 kb on + strandat 2272.721 kb on + strand, within Psest_2136at 2272.722 kb on - strand, within Psest_2136at 2272.834 kb on + strand, within Psest_2136at 2272.835 kb on - strand, within Psest_2136at 2273.090 kb on + strand, within Psest_2136at 2273.090 kb on + strand, within Psest_2136

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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2,270,895 - Psest_2134 0.52 +0.2
2,271,095 + Psest_2134 0.67 -0.3
2,271,095 + Psest_2134 0.67 +0.5
2,271,297 + Psest_2134 0.82 +0.2
2,271,317 - Psest_2134 0.83 -0.2
2,271,317 - Psest_2134 0.83 -0.1
2,271,317 - Psest_2134 0.83 +0.1
2,271,526 + -0.1
2,271,527 - -0.6
2,271,537 + +0.9
2,271,537 + +0.7
2,271,537 + +1.0
2,271,538 - -0.6
2,271,538 - +0.2
2,271,538 - -2.2
2,271,873 + Psest_2135 0.48 +0.3
2,271,874 - Psest_2135 0.49 +0.4
2,271,980 - Psest_2135 0.70 +0.6
2,271,980 - Psest_2135 0.70 +1.2
2,271,980 - Psest_2135 0.70 +0.2
2,272,169 + +0.9
2,272,265 + +0.0
2,272,268 + +0.3
2,272,268 + -0.5
2,272,268 + +0.2
2,272,268 + +1.5
2,272,269 - -1.3
2,272,269 - -0.7
2,272,333 - +0.6
2,272,373 - +1.0
2,272,402 + +0.5
2,272,402 + -0.3
2,272,402 + +0.5
2,272,403 - +1.2
2,272,403 - +0.9
2,272,403 - +0.4
2,272,408 + +0.5
2,272,408 + +0.1
2,272,408 + +0.8
2,272,721 + Psest_2136 0.26 -0.5
2,272,722 - Psest_2136 0.26 -0.1
2,272,834 + Psest_2136 0.35 +0.9
2,272,835 - Psest_2136 0.35 +0.3
2,273,090 + Psest_2136 0.56 -0.5
2,273,090 + Psest_2136 0.56 +0.8

Or see this region's nucleotide sequence