Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1624

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1622 and Psest_1623 are separated by 94 nucleotidesPsest_1623 and Psest_1624 are separated by 28 nucleotidesPsest_1624 and Psest_1625 are separated by 57 nucleotidesPsest_1625 and Psest_1626 are separated by 45 nucleotides Psest_1622: Psest_1622 - hypothetical protein, at 1,726,224 to 1,726,646 _1622 Psest_1623: Psest_1623 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 1,726,741 to 1,727,295 _1623 Psest_1624: Psest_1624 - Transcriptional regulator, at 1,727,324 to 1,728,232 _1624 Psest_1625: Psest_1625 - hypothetical protein, at 1,728,290 to 1,728,610 _1625 Psest_1626: Psest_1626 - Predicted integral membrane protein, at 1,728,656 to 1,729,093 _1626 Position (kb) 1727 1728 1729Strain fitness (log2 ratio) -2 -1 0 1 2at 1726.389 kb on - strand, within Psest_1622at 1726.406 kb on - strand, within Psest_1622at 1726.406 kb on - strand, within Psest_1622at 1726.406 kb on - strand, within Psest_1622at 1726.584 kb on + strand, within Psest_1622at 1726.584 kb on + strand, within Psest_1622at 1726.585 kb on - strand, within Psest_1622at 1726.694 kb on - strandat 1726.705 kb on + strandat 1726.784 kb on - strandat 1726.852 kb on + strand, within Psest_1623at 1726.853 kb on - strand, within Psest_1623at 1727.117 kb on + strand, within Psest_1623at 1727.131 kb on + strand, within Psest_1623at 1727.131 kb on + strand, within Psest_1623at 1727.131 kb on + strand, within Psest_1623at 1727.132 kb on - strand, within Psest_1623at 1727.136 kb on - strand, within Psest_1623at 1727.338 kb on + strandat 1727.338 kb on + strandat 1727.339 kb on - strandat 1727.358 kb on + strandat 1727.358 kb on + strandat 1727.359 kb on - strandat 1727.416 kb on + strand, within Psest_1624at 1727.421 kb on + strand, within Psest_1624at 1727.421 kb on + strand, within Psest_1624at 1727.422 kb on - strand, within Psest_1624at 1727.422 kb on - strand, within Psest_1624at 1727.422 kb on - strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.428 kb on - strand, within Psest_1624at 1727.428 kb on - strand, within Psest_1624at 1727.428 kb on - strand, within Psest_1624at 1728.117 kb on + strand, within Psest_1624at 1728.117 kb on + strand, within Psest_1624at 1728.117 kb on + strand, within Psest_1624at 1728.117 kb on + strand, within Psest_1624at 1728.117 kb on + strand, within Psest_1624at 1728.117 kb on + strand, within Psest_1624at 1728.118 kb on - strand, within Psest_1624at 1728.118 kb on - strand, within Psest_1624at 1728.118 kb on - strand, within Psest_1624at 1728.118 kb on - strand, within Psest_1624at 1728.118 kb on - strand, within Psest_1624at 1728.118 kb on - strand, within Psest_1624at 1728.246 kb on - strandat 1728.248 kb on - strandat 1728.272 kb on - strandat 1728.351 kb on - strand, within Psest_1625at 1728.357 kb on + strand, within Psest_1625at 1728.358 kb on - strand, within Psest_1625at 1728.447 kb on - strand, within Psest_1625at 1728.608 kb on + strandat 1728.609 kb on - strandat 1728.665 kb on + strandat 1728.666 kb on - strandat 1728.666 kb on - strandat 1728.744 kb on + strand, within Psest_1626at 1728.754 kb on - strand, within Psest_1626at 1728.933 kb on + strand, within Psest_1626at 1729.038 kb on + strand, within Psest_1626at 1729.039 kb on - strand, within Psest_1626at 1729.039 kb on - strand, within Psest_1626at 1729.055 kb on + strandat 1729.206 kb on + strandat 1729.206 kb on + strandat 1729.206 kb on + strandat 1729.206 kb on + strandat 1729.207 kb on - strandat 1729.207 kb on - strandat 1729.207 kb on - strandat 1729.207 kb on - strandat 1729.207 kb on - strandat 1729.216 kb on + strandat 1729.217 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,726,389 - Psest_1622 0.39 -0.5
1,726,406 - Psest_1622 0.43 +0.9
1,726,406 - Psest_1622 0.43 +0.4
1,726,406 - Psest_1622 0.43 +2.3
1,726,584 + Psest_1622 0.85 +0.6
1,726,584 + Psest_1622 0.85 +0.3
1,726,585 - Psest_1622 0.85 +0.3
1,726,694 - +0.1
1,726,705 + -0.9
1,726,784 - +1.7
1,726,852 + Psest_1623 0.20 +0.7
1,726,853 - Psest_1623 0.20 +0.8
1,727,117 + Psest_1623 0.68 +0.4
1,727,131 + Psest_1623 0.70 -0.2
1,727,131 + Psest_1623 0.70 -0.3
1,727,131 + Psest_1623 0.70 -1.3
1,727,132 - Psest_1623 0.70 -0.3
1,727,136 - Psest_1623 0.71 -0.1
1,727,338 + +0.6
1,727,338 + -1.9
1,727,339 - +0.8
1,727,358 + -2.0
1,727,358 + -0.4
1,727,359 - +0.7
1,727,416 + Psest_1624 0.10 +0.6
1,727,421 + Psest_1624 0.11 +0.1
1,727,421 + Psest_1624 0.11 +2.0
1,727,422 - Psest_1624 0.11 -1.0
1,727,422 - Psest_1624 0.11 -0.1
1,727,422 - Psest_1624 0.11 +2.0
1,727,427 + Psest_1624 0.11 +0.2
1,727,427 + Psest_1624 0.11 +0.5
1,727,427 + Psest_1624 0.11 +1.9
1,727,427 + Psest_1624 0.11 -1.2
1,727,427 + Psest_1624 0.11 +1.6
1,727,427 + Psest_1624 0.11 -1.7
1,727,428 - Psest_1624 0.11 +0.8
1,727,428 - Psest_1624 0.11 +0.7
1,727,428 - Psest_1624 0.11 +0.4
1,728,117 + Psest_1624 0.87 +0.0
1,728,117 + Psest_1624 0.87 +0.3
1,728,117 + Psest_1624 0.87 +0.6
1,728,117 + Psest_1624 0.87 -0.8
1,728,117 + Psest_1624 0.87 +0.1
1,728,117 + Psest_1624 0.87 -0.2
1,728,118 - Psest_1624 0.87 +1.6
1,728,118 - Psest_1624 0.87 +2.1
1,728,118 - Psest_1624 0.87 +0.3
1,728,118 - Psest_1624 0.87 +0.3
1,728,118 - Psest_1624 0.87 +0.4
1,728,118 - Psest_1624 0.87 +0.9
1,728,246 - -0.2
1,728,248 - +0.2
1,728,272 - -0.1
1,728,351 - Psest_1625 0.19 +0.6
1,728,357 + Psest_1625 0.21 -0.1
1,728,358 - Psest_1625 0.21 +0.7
1,728,447 - Psest_1625 0.49 +0.3
1,728,608 + -0.9
1,728,609 - +0.3
1,728,665 + -0.2
1,728,666 - -1.6
1,728,666 - +0.1
1,728,744 + Psest_1626 0.20 +1.0
1,728,754 - Psest_1626 0.22 +0.5
1,728,933 + Psest_1626 0.63 +0.5
1,729,038 + Psest_1626 0.87 +0.6
1,729,039 - Psest_1626 0.87 +1.3
1,729,039 - Psest_1626 0.87 +0.6
1,729,055 + -2.2
1,729,206 + -1.3
1,729,206 + -0.0
1,729,206 + +0.3
1,729,206 + -0.1
1,729,207 - +0.3
1,729,207 - -0.5
1,729,207 - +0.1
1,729,207 - +0.2
1,729,207 - -0.0
1,729,216 + +1.3
1,729,217 - -0.9

Or see this region's nucleotide sequence