Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1622

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1621 and Psest_1622 are separated by 9 nucleotidesPsest_1622 and Psest_1623 are separated by 94 nucleotidesPsest_1623 and Psest_1624 are separated by 28 nucleotides Psest_1621: Psest_1621 - Uncharacterized protein conserved in bacteria, at 1,725,084 to 1,726,214 _1621 Psest_1622: Psest_1622 - hypothetical protein, at 1,726,224 to 1,726,646 _1622 Psest_1623: Psest_1623 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 1,726,741 to 1,727,295 _1623 Psest_1624: Psest_1624 - Transcriptional regulator, at 1,727,324 to 1,728,232 _1624 Position (kb) 1726 1727Strain fitness (log2 ratio) -2 -1 0 1 2at 1725.306 kb on + strand, within Psest_1621at 1725.307 kb on - strand, within Psest_1621at 1725.315 kb on + strand, within Psest_1621at 1725.315 kb on + strand, within Psest_1621at 1725.315 kb on + strand, within Psest_1621at 1725.315 kb on + strand, within Psest_1621at 1725.316 kb on - strand, within Psest_1621at 1725.316 kb on - strand, within Psest_1621at 1725.316 kb on - strand, within Psest_1621at 1725.316 kb on - strand, within Psest_1621at 1725.369 kb on + strand, within Psest_1621at 1725.656 kb on - strand, within Psest_1621at 1725.747 kb on + strand, within Psest_1621at 1725.769 kb on - strand, within Psest_1621at 1725.769 kb on - strand, within Psest_1621at 1725.769 kb on - strand, within Psest_1621at 1725.769 kb on - strand, within Psest_1621at 1725.918 kb on + strand, within Psest_1621at 1726.092 kb on + strand, within Psest_1621at 1726.096 kb on + strand, within Psest_1621at 1726.096 kb on + strand, within Psest_1621at 1726.096 kb on + strand, within Psest_1621at 1726.096 kb on + strand, within Psest_1621at 1726.096 kb on + strand, within Psest_1621at 1726.096 kb on + strand, within Psest_1621at 1726.096 kb on + strand, within Psest_1621at 1726.096 kb on + strand, within Psest_1621at 1726.097 kb on - strand, within Psest_1621at 1726.097 kb on - strand, within Psest_1621at 1726.097 kb on - strand, within Psest_1621at 1726.212 kb on + strandat 1726.212 kb on + strandat 1726.213 kb on - strandat 1726.316 kb on - strand, within Psest_1622at 1726.389 kb on - strand, within Psest_1622at 1726.406 kb on - strand, within Psest_1622at 1726.406 kb on - strand, within Psest_1622at 1726.406 kb on - strand, within Psest_1622at 1726.584 kb on + strand, within Psest_1622at 1726.584 kb on + strand, within Psest_1622at 1726.585 kb on - strand, within Psest_1622at 1726.694 kb on - strandat 1726.705 kb on + strandat 1726.784 kb on - strandat 1726.852 kb on + strand, within Psest_1623at 1726.853 kb on - strand, within Psest_1623at 1727.117 kb on + strand, within Psest_1623at 1727.131 kb on + strand, within Psest_1623at 1727.131 kb on + strand, within Psest_1623at 1727.131 kb on + strand, within Psest_1623at 1727.132 kb on - strand, within Psest_1623at 1727.136 kb on - strand, within Psest_1623at 1727.338 kb on + strandat 1727.338 kb on + strandat 1727.339 kb on - strandat 1727.358 kb on + strandat 1727.358 kb on + strandat 1727.359 kb on - strandat 1727.416 kb on + strand, within Psest_1624at 1727.421 kb on + strand, within Psest_1624at 1727.421 kb on + strand, within Psest_1624at 1727.422 kb on - strand, within Psest_1624at 1727.422 kb on - strand, within Psest_1624at 1727.422 kb on - strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.427 kb on + strand, within Psest_1624at 1727.428 kb on - strand, within Psest_1624at 1727.428 kb on - strand, within Psest_1624at 1727.428 kb on - strand, within Psest_1624

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,725,306 + Psest_1621 0.20 -0.4
1,725,307 - Psest_1621 0.20 -0.1
1,725,315 + Psest_1621 0.20 +0.1
1,725,315 + Psest_1621 0.20 +0.0
1,725,315 + Psest_1621 0.20 -1.9
1,725,315 + Psest_1621 0.20 +2.0
1,725,316 - Psest_1621 0.21 -0.1
1,725,316 - Psest_1621 0.21 +0.7
1,725,316 - Psest_1621 0.21 +0.2
1,725,316 - Psest_1621 0.21 +0.3
1,725,369 + Psest_1621 0.25 +0.5
1,725,656 - Psest_1621 0.51 -0.3
1,725,747 + Psest_1621 0.59 -0.3
1,725,769 - Psest_1621 0.61 +1.1
1,725,769 - Psest_1621 0.61 +1.7
1,725,769 - Psest_1621 0.61 -0.1
1,725,769 - Psest_1621 0.61 -0.4
1,725,918 + Psest_1621 0.74 -2.4
1,726,092 + Psest_1621 0.89 +0.0
1,726,096 + Psest_1621 0.89 +0.5
1,726,096 + Psest_1621 0.89 +1.0
1,726,096 + Psest_1621 0.89 -0.3
1,726,096 + Psest_1621 0.89 -0.3
1,726,096 + Psest_1621 0.89 -0.6
1,726,096 + Psest_1621 0.89 -0.1
1,726,096 + Psest_1621 0.89 +0.6
1,726,096 + Psest_1621 0.89 +0.2
1,726,097 - Psest_1621 0.90 +0.9
1,726,097 - Psest_1621 0.90 -1.0
1,726,097 - Psest_1621 0.90 +0.3
1,726,212 + +1.1
1,726,212 + +0.6
1,726,213 - +0.7
1,726,316 - Psest_1622 0.22 +1.4
1,726,389 - Psest_1622 0.39 -0.5
1,726,406 - Psest_1622 0.43 +0.9
1,726,406 - Psest_1622 0.43 +0.4
1,726,406 - Psest_1622 0.43 +2.3
1,726,584 + Psest_1622 0.85 +0.6
1,726,584 + Psest_1622 0.85 +0.3
1,726,585 - Psest_1622 0.85 +0.3
1,726,694 - +0.1
1,726,705 + -0.9
1,726,784 - +1.7
1,726,852 + Psest_1623 0.20 +0.7
1,726,853 - Psest_1623 0.20 +0.8
1,727,117 + Psest_1623 0.68 +0.4
1,727,131 + Psest_1623 0.70 -0.2
1,727,131 + Psest_1623 0.70 -0.3
1,727,131 + Psest_1623 0.70 -1.3
1,727,132 - Psest_1623 0.70 -0.3
1,727,136 - Psest_1623 0.71 -0.1
1,727,338 + +0.6
1,727,338 + -1.9
1,727,339 - +0.8
1,727,358 + -2.0
1,727,358 + -0.4
1,727,359 - +0.7
1,727,416 + Psest_1624 0.10 +0.6
1,727,421 + Psest_1624 0.11 +0.1
1,727,421 + Psest_1624 0.11 +2.0
1,727,422 - Psest_1624 0.11 -1.0
1,727,422 - Psest_1624 0.11 -0.1
1,727,422 - Psest_1624 0.11 +2.0
1,727,427 + Psest_1624 0.11 +0.2
1,727,427 + Psest_1624 0.11 +0.5
1,727,427 + Psest_1624 0.11 +1.9
1,727,427 + Psest_1624 0.11 -1.2
1,727,427 + Psest_1624 0.11 +1.6
1,727,427 + Psest_1624 0.11 -1.7
1,727,428 - Psest_1624 0.11 +0.8
1,727,428 - Psest_1624 0.11 +0.7
1,727,428 - Psest_1624 0.11 +0.4

Or see this region's nucleotide sequence