Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1494 and Psest_1495 are separated by 155 nucleotides Psest_1495 and Psest_1496 are separated by 73 nucleotides Psest_1496 and Psest_1497 are separated by 3 nucleotides
Psest_1494: Psest_1494 - DNA-binding regulatory protein, YebC/PmpR family, at 1,596,654 to 1,597,403
_1494
Psest_1495: Psest_1495 - crossover junction endodeoxyribonuclease RuvC, at 1,597,559 to 1,598,083
_1495
Psest_1496: Psest_1496 - Holliday junction DNA helicase, RuvA subunit, at 1,598,157 to 1,598,762
_1496
Psest_1497: Psest_1497 - Holliday junction DNA helicase, RuvB subunit, at 1,598,766 to 1,599,818
_1497
Position (kb)
1597
1598
1599 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1597.435 kb on + strand at 1597.435 kb on + strand at 1597.435 kb on + strand at 1597.436 kb on - strand at 1597.520 kb on + strand at 1597.521 kb on - strand at 1597.537 kb on - strand at 1597.540 kb on + strand at 1597.540 kb on + strand at 1598.113 kb on - strand at 1598.332 kb on + strand, within Psest_1496 at 1598.333 kb on - strand, within Psest_1496 at 1598.333 kb on - strand, within Psest_1496 at 1598.760 kb on + strand at 1598.760 kb on + strand at 1598.760 kb on + strand at 1598.760 kb on + strand at 1598.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 1,597,435 + -0.8 1,597,435 + +0.2 1,597,435 + +0.4 1,597,436 - +0.2 1,597,520 + -0.3 1,597,521 - -0.0 1,597,537 - -1.0 1,597,540 + -0.3 1,597,540 + +0.2 1,598,113 - -1.9 1,598,332 + Psest_1496 0.29 -0.4 1,598,333 - Psest_1496 0.29 -2.9 1,598,333 - Psest_1496 0.29 -3.0 1,598,760 + -0.3 1,598,760 + +0.4 1,598,760 + -0.3 1,598,760 + +0.3 1,598,761 - -0.4
Or see this region's nucleotide sequence