Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1186

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1184 and Psest_1185 are separated by 106 nucleotidesPsest_1185 and Psest_1186 overlap by 4 nucleotidesPsest_1186 and Psest_1187 are separated by 82 nucleotides Psest_1184: Psest_1184 - Uncharacterized protein, possibly involved in utilization of glycolate and propanediol, at 1,286,627 to 1,287,166 _1184 Psest_1185: Psest_1185 - heavy metal response regulator, at 1,287,273 to 1,287,947 _1185 Psest_1186: Psest_1186 - heavy metal sensor kinase, at 1,287,944 to 1,289,302 _1186 Psest_1187: Psest_1187 - exodeoxyribonuclease III, at 1,289,385 to 1,290,176 _1187 Position (kb) 1287 1288 1289 1290Strain fitness (log2 ratio) -3 -2 -1 0 1at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.090 kb on - strand, within Psest_1184at 1287.090 kb on - strand, within Psest_1184at 1287.090 kb on - strand, within Psest_1184at 1287.206 kb on + strandat 1287.206 kb on + strandat 1287.207 kb on - strandat 1287.216 kb on + strandat 1287.216 kb on + strandat 1287.217 kb on - strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.248 kb on + strandat 1287.249 kb on - strandat 1287.249 kb on - strandat 1287.249 kb on - strandat 1287.315 kb on + strandat 1287.315 kb on + strandat 1287.384 kb on + strand, within Psest_1185at 1287.384 kb on + strand, within Psest_1185at 1287.385 kb on - strand, within Psest_1185at 1287.461 kb on - strand, within Psest_1185at 1287.900 kb on - strandat 1287.924 kb on + strandat 1287.924 kb on + strandat 1287.924 kb on + strandat 1288.031 kb on + strandat 1288.032 kb on - strandat 1288.032 kb on - strandat 1288.032 kb on - strandat 1288.032 kb on - strandat 1288.032 kb on - strandat 1288.038 kb on - strandat 1288.038 kb on - strandat 1288.083 kb on + strand, within Psest_1186at 1288.083 kb on + strand, within Psest_1186at 1288.102 kb on + strand, within Psest_1186at 1288.103 kb on - strand, within Psest_1186at 1288.163 kb on + strand, within Psest_1186at 1288.163 kb on + strand, within Psest_1186at 1288.204 kb on - strand, within Psest_1186at 1288.407 kb on + strand, within Psest_1186at 1288.408 kb on - strand, within Psest_1186at 1288.408 kb on - strand, within Psest_1186at 1288.776 kb on - strand, within Psest_1186at 1289.144 kb on + strand, within Psest_1186at 1289.248 kb on + strandat 1289.311 kb on - strandat 1289.351 kb on + strandat 1289.351 kb on + strandat 1289.351 kb on + strandat 1289.351 kb on + strandat 1289.352 kb on - strandat 1289.352 kb on - strandat 1289.352 kb on - strandat 1289.359 kb on + strandat 1289.359 kb on + strandat 1289.359 kb on + strandat 1289.360 kb on - strandat 1289.360 kb on - strandat 1289.709 kb on + strand, within Psest_1187at 1289.710 kb on - strand, within Psest_1187at 1289.710 kb on - strand, within Psest_1187at 1289.752 kb on - strand, within Psest_1187at 1289.835 kb on + strand, within Psest_1187at 1289.836 kb on - strand, within Psest_1187at 1289.836 kb on - strand, within Psest_1187at 1289.865 kb on + strand, within Psest_1187at 1289.865 kb on + strand, within Psest_1187at 1289.865 kb on + strand, within Psest_1187at 1289.865 kb on + strand, within Psest_1187at 1289.865 kb on + strand, within Psest_1187at 1289.865 kb on + strand, within Psest_1187at 1289.865 kb on + strand, within Psest_1187at 1289.865 kb on + strand, within Psest_1187at 1289.866 kb on - strand, within Psest_1187at 1289.866 kb on - strand, within Psest_1187at 1289.866 kb on - strand, within Psest_1187at 1289.866 kb on - strand, within Psest_1187at 1289.866 kb on - strand, within Psest_1187at 1289.866 kb on - strand, within Psest_1187at 1289.866 kb on - strand, within Psest_1187at 1289.922 kb on + strand, within Psest_1187at 1289.922 kb on + strand, within Psest_1187at 1289.988 kb on + strand, within Psest_1187at 1289.988 kb on + strand, within Psest_1187at 1289.988 kb on + strand, within Psest_1187at 1289.988 kb on + strand, within Psest_1187at 1289.988 kb on + strand, within Psest_1187at 1289.988 kb on + strand, within Psest_1187at 1289.988 kb on + strand, within Psest_1187at 1289.988 kb on + strand, within Psest_1187at 1289.989 kb on - strand, within Psest_1187at 1289.989 kb on - strand, within Psest_1187at 1289.989 kb on - strand, within Psest_1187at 1289.989 kb on - strand, within Psest_1187at 1289.989 kb on - strand, within Psest_1187at 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.264 kb on + strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.265 kb on - strandat 1290.268 kb on + strandat 1290.268 kb on + strandat 1290.268 kb on + strandat 1290.268 kb on + strandat 1290.268 kb on + strandat 1290.268 kb on + strandat 1290.269 kb on - strandat 1290.269 kb on - strandat 1290.269 kb on - strandat 1290.269 kb on - strandat 1290.269 kb on - strandat 1290.283 kb on + strandat 1290.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,287,089 + Psest_1184 0.86 -1.0
1,287,089 + Psest_1184 0.86 +1.0
1,287,089 + Psest_1184 0.86 +1.3
1,287,089 + Psest_1184 0.86 +0.2
1,287,089 + Psest_1184 0.86 -0.5
1,287,089 + Psest_1184 0.86 -0.8
1,287,089 + Psest_1184 0.86 +0.3
1,287,089 + Psest_1184 0.86 +0.4
1,287,090 - Psest_1184 0.86 -0.3
1,287,090 - Psest_1184 0.86 -1.5
1,287,090 - Psest_1184 0.86 +0.6
1,287,206 + +0.0
1,287,206 + -0.1
1,287,207 - -0.4
1,287,216 + -0.5
1,287,216 + +0.1
1,287,217 - -0.6
1,287,248 + +1.3
1,287,248 + +0.8
1,287,248 + +0.6
1,287,248 + -3.5
1,287,248 + +0.5
1,287,248 + -0.2
1,287,248 + -0.2
1,287,248 + -0.2
1,287,248 + +1.3
1,287,248 + +0.4
1,287,249 - -0.2
1,287,249 - +0.7
1,287,249 - +0.1
1,287,315 + +0.6
1,287,315 + +0.6
1,287,384 + Psest_1185 0.16 -3.1
1,287,384 + Psest_1185 0.16 -0.1
1,287,385 - Psest_1185 0.17 +0.4
1,287,461 - Psest_1185 0.28 -0.6
1,287,900 - -0.7
1,287,924 + +0.7
1,287,924 + -0.2
1,287,924 + +0.7
1,288,031 + +0.2
1,288,032 - +0.6
1,288,032 - +0.2
1,288,032 - +0.4
1,288,032 - +0.4
1,288,032 - -0.3
1,288,038 - -0.6
1,288,038 - -0.2
1,288,083 + Psest_1186 0.10 -0.0
1,288,083 + Psest_1186 0.10 +0.0
1,288,102 + Psest_1186 0.12 +0.8
1,288,103 - Psest_1186 0.12 +0.7
1,288,163 + Psest_1186 0.16 +0.6
1,288,163 + Psest_1186 0.16 +0.2
1,288,204 - Psest_1186 0.19 +0.0
1,288,407 + Psest_1186 0.34 +0.5
1,288,408 - Psest_1186 0.34 +0.5
1,288,408 - Psest_1186 0.34 +1.6
1,288,776 - Psest_1186 0.61 +1.5
1,289,144 + Psest_1186 0.88 +0.5
1,289,248 + +0.9
1,289,311 - +0.2
1,289,351 + -2.8
1,289,351 + +0.4
1,289,351 + +0.2
1,289,351 + -0.5
1,289,352 - -0.7
1,289,352 - +0.1
1,289,352 - -0.3
1,289,359 + +0.8
1,289,359 + +0.8
1,289,359 + -0.3
1,289,360 - +0.9
1,289,360 - -0.4
1,289,709 + Psest_1187 0.41 +0.3
1,289,710 - Psest_1187 0.41 +0.6
1,289,710 - Psest_1187 0.41 -0.1
1,289,752 - Psest_1187 0.46 -0.6
1,289,835 + Psest_1187 0.57 +0.2
1,289,836 - Psest_1187 0.57 -0.4
1,289,836 - Psest_1187 0.57 -0.0
1,289,865 + Psest_1187 0.61 -0.3
1,289,865 + Psest_1187 0.61 +1.2
1,289,865 + Psest_1187 0.61 +0.6
1,289,865 + Psest_1187 0.61 -1.9
1,289,865 + Psest_1187 0.61 +0.8
1,289,865 + Psest_1187 0.61 +0.7
1,289,865 + Psest_1187 0.61 +0.8
1,289,865 + Psest_1187 0.61 -0.2
1,289,866 - Psest_1187 0.61 -1.3
1,289,866 - Psest_1187 0.61 +0.9
1,289,866 - Psest_1187 0.61 +0.1
1,289,866 - Psest_1187 0.61 +0.1
1,289,866 - Psest_1187 0.61 +1.4
1,289,866 - Psest_1187 0.61 -0.5
1,289,866 - Psest_1187 0.61 +1.0
1,289,922 + Psest_1187 0.68 +0.2
1,289,922 + Psest_1187 0.68 +0.8
1,289,988 + Psest_1187 0.76 +0.1
1,289,988 + Psest_1187 0.76 +0.6
1,289,988 + Psest_1187 0.76 -0.2
1,289,988 + Psest_1187 0.76 -0.2
1,289,988 + Psest_1187 0.76 +1.0
1,289,988 + Psest_1187 0.76 -0.0
1,289,988 + Psest_1187 0.76 -3.2
1,289,988 + Psest_1187 0.76 +0.1
1,289,989 - Psest_1187 0.76 +0.4
1,289,989 - Psest_1187 0.76 +0.7
1,289,989 - Psest_1187 0.76 -0.2
1,289,989 - Psest_1187 0.76 -2.1
1,289,989 - Psest_1187 0.76 +0.3
1,290,264 + -0.8
1,290,264 + -1.3
1,290,264 + +0.5
1,290,264 + +0.4
1,290,264 + +0.6
1,290,264 + +0.3
1,290,264 + +0.6
1,290,264 + +0.6
1,290,264 + +0.7
1,290,264 + -0.0
1,290,264 + +0.6
1,290,264 + +0.8
1,290,264 + +0.8
1,290,264 + +0.8
1,290,264 + +0.8
1,290,265 - -0.2
1,290,265 - -0.2
1,290,265 - -1.4
1,290,265 - -0.3
1,290,265 - -1.1
1,290,265 - +0.7
1,290,265 - -0.0
1,290,265 - -0.7
1,290,265 - +0.1
1,290,265 - -2.9
1,290,265 - -0.2
1,290,265 - +0.4
1,290,268 + +0.1
1,290,268 + +1.0
1,290,268 + +0.4
1,290,268 + +0.9
1,290,268 + +0.6
1,290,268 + +1.1
1,290,269 - -1.1
1,290,269 - -0.4
1,290,269 - +0.2
1,290,269 - +0.1
1,290,269 - +1.2
1,290,283 + +1.1
1,290,284 - +0.5

Or see this region's nucleotide sequence