Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2664

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2663 and Psest_2664 are separated by 153 nucleotidesPsest_2664 and Psest_2665 are separated by 54 nucleotidesPsest_2665 and Psest_2666 are separated by 20 nucleotides Psest_2663: Psest_2663 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,850,452 to 2,851,342 _2663 Psest_2664: Psest_2664 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,851,496 to 2,852,485 _2664 Psest_2665: Psest_2665 - Citrate lyase beta subunit, at 2,852,540 to 2,853,367 _2665 Psest_2666: Psest_2666 - Predicted acyl-CoA transferases/carnitine dehydratase, at 2,853,388 to 2,854,593 _2666 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2850.681 kb on + strand, within Psest_2663at 2850.682 kb on - strand, within Psest_2663at 2850.682 kb on - strand, within Psest_2663at 2850.682 kb on - strand, within Psest_2663at 2850.796 kb on - strand, within Psest_2663at 2850.888 kb on + strand, within Psest_2663at 2850.888 kb on + strand, within Psest_2663at 2850.888 kb on + strand, within Psest_2663at 2850.888 kb on + strand, within Psest_2663at 2850.888 kb on + strand, within Psest_2663at 2850.888 kb on + strand, within Psest_2663at 2850.889 kb on - strand, within Psest_2663at 2850.889 kb on - strand, within Psest_2663at 2850.889 kb on - strand, within Psest_2663at 2850.889 kb on - strand, within Psest_2663at 2850.903 kb on + strand, within Psest_2663at 2850.903 kb on + strand, within Psest_2663at 2850.904 kb on - strand, within Psest_2663at 2850.904 kb on - strand, within Psest_2663at 2850.904 kb on - strand, within Psest_2663at 2850.908 kb on - strand, within Psest_2663at 2850.908 kb on - strand, within Psest_2663at 2851.332 kb on + strandat 2851.357 kb on - strandat 2851.357 kb on - strandat 2851.357 kb on - strandat 2851.357 kb on - strandat 2851.357 kb on - strandat 2851.357 kb on - strandat 2851.378 kb on + strandat 2851.379 kb on - strandat 2851.379 kb on - strandat 2851.379 kb on - strandat 2851.467 kb on + strandat 2851.468 kb on - strandat 2851.468 kb on - strandat 2851.468 kb on - strandat 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strandat 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.816 kb on - strand, within Psest_2664at 2851.848 kb on + strand, within Psest_2664at 2851.848 kb on + strand, within Psest_2664at 2851.848 kb on + strand, within Psest_2664at 2851.902 kb on + strand, within Psest_2664at 2852.175 kb on + strand, within Psest_2664at 2852.175 kb on + strand, within Psest_2664at 2852.175 kb on + strand, within Psest_2664at 2852.175 kb on + strand, within Psest_2664at 2852.176 kb on - strand, within Psest_2664at 2852.196 kb on + strand, within Psest_2664at 2852.476 kb on + strandat 2852.476 kb on + strandat 2852.491 kb on + strandat 2852.515 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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2,850,681 + Psest_2663 0.26 +0.3
2,850,682 - Psest_2663 0.26 -0.8
2,850,682 - Psest_2663 0.26 -0.4
2,850,682 - Psest_2663 0.26 +0.1
2,850,796 - Psest_2663 0.39 +0.5
2,850,888 + Psest_2663 0.49 +0.7
2,850,888 + Psest_2663 0.49 +0.5
2,850,888 + Psest_2663 0.49 -2.9
2,850,888 + Psest_2663 0.49 +0.9
2,850,888 + Psest_2663 0.49 +1.4
2,850,888 + Psest_2663 0.49 -1.2
2,850,889 - Psest_2663 0.49 -0.1
2,850,889 - Psest_2663 0.49 -0.3
2,850,889 - Psest_2663 0.49 +0.4
2,850,889 - Psest_2663 0.49 -0.7
2,850,903 + Psest_2663 0.51 -1.1
2,850,903 + Psest_2663 0.51 -0.3
2,850,904 - Psest_2663 0.51 +0.6
2,850,904 - Psest_2663 0.51 -0.6
2,850,904 - Psest_2663 0.51 -0.0
2,850,908 - Psest_2663 0.51 +0.6
2,850,908 - Psest_2663 0.51 +0.4
2,851,332 + +1.3
2,851,357 - +0.5
2,851,357 - -0.1
2,851,357 - +0.1
2,851,357 - +1.0
2,851,357 - +0.8
2,851,357 - -1.1
2,851,378 + -1.0
2,851,379 - +0.8
2,851,379 - -0.8
2,851,379 - -0.1
2,851,467 + +0.7
2,851,468 - +0.5
2,851,468 - +0.4
2,851,468 - +0.5
2,851,782 + Psest_2664 0.29 +1.0
2,851,782 + Psest_2664 0.29 -0.7
2,851,782 + +1.2
2,851,782 + Psest_2664 0.29 +1.7
2,851,782 + Psest_2664 0.29 +2.0
2,851,782 + Psest_2664 0.29 +0.8
2,851,782 + Psest_2664 0.29 +0.6
2,851,782 + Psest_2664 0.29 +0.4
2,851,815 + Psest_2664 0.32 +2.7
2,851,815 + Psest_2664 0.32 +0.7
2,851,815 + Psest_2664 0.32 +0.4
2,851,815 + Psest_2664 0.32 +2.2
2,851,815 + Psest_2664 0.32 +1.0
2,851,815 + Psest_2664 0.32 +0.1
2,851,816 - Psest_2664 0.32 -0.6
2,851,848 + Psest_2664 0.36 -0.5
2,851,848 + Psest_2664 0.36 -1.2
2,851,848 + Psest_2664 0.36 +1.5
2,851,902 + Psest_2664 0.41 +1.4
2,852,175 + Psest_2664 0.69 -0.6
2,852,175 + Psest_2664 0.69 +0.2
2,852,175 + Psest_2664 0.69 +0.3
2,852,175 + Psest_2664 0.69 +0.5
2,852,176 - Psest_2664 0.69 +0.3
2,852,196 + Psest_2664 0.71 +1.6
2,852,476 + -0.6
2,852,476 + -0.7
2,852,491 + -0.3
2,852,515 + -0.1

Or see this region's nucleotide sequence