Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2663 and Psest_2664 are separated by 153 nucleotides Psest_2664 and Psest_2665 are separated by 54 nucleotides Psest_2665 and Psest_2666 are separated by 20 nucleotides
Psest_2663: Psest_2663 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,850,452 to 2,851,342
_2663
Psest_2664: Psest_2664 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,851,496 to 2,852,485
_2664
Psest_2665: Psest_2665 - Citrate lyase beta subunit, at 2,852,540 to 2,853,367
_2665
Psest_2666: Psest_2666 - Predicted acyl-CoA transferases/carnitine dehydratase, at 2,853,388 to 2,854,593
_2666
Position (kb)
2851
2852
2853 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2850.681 kb on + strand, within Psest_2663 at 2850.682 kb on - strand, within Psest_2663 at 2850.682 kb on - strand, within Psest_2663 at 2850.682 kb on - strand, within Psest_2663 at 2850.796 kb on - strand, within Psest_2663 at 2850.888 kb on + strand, within Psest_2663 at 2850.888 kb on + strand, within Psest_2663 at 2850.888 kb on + strand, within Psest_2663 at 2850.888 kb on + strand, within Psest_2663 at 2850.888 kb on + strand, within Psest_2663 at 2850.888 kb on + strand, within Psest_2663 at 2850.889 kb on - strand, within Psest_2663 at 2850.889 kb on - strand, within Psest_2663 at 2850.889 kb on - strand, within Psest_2663 at 2850.889 kb on - strand, within Psest_2663 at 2850.903 kb on + strand, within Psest_2663 at 2850.903 kb on + strand, within Psest_2663 at 2850.904 kb on - strand, within Psest_2663 at 2850.904 kb on - strand, within Psest_2663 at 2850.904 kb on - strand, within Psest_2663 at 2850.908 kb on - strand, within Psest_2663 at 2850.908 kb on - strand, within Psest_2663 at 2851.332 kb on + strand at 2851.357 kb on - strand at 2851.357 kb on - strand at 2851.357 kb on - strand at 2851.357 kb on - strand at 2851.357 kb on - strand at 2851.357 kb on - strand at 2851.378 kb on + strand at 2851.379 kb on - strand at 2851.379 kb on - strand at 2851.379 kb on - strand at 2851.467 kb on + strand at 2851.468 kb on - strand at 2851.468 kb on - strand at 2851.468 kb on - strand at 2851.782 kb on + strand, within Psest_2664 at 2851.782 kb on + strand, within Psest_2664 at 2851.782 kb on + strand at 2851.782 kb on + strand, within Psest_2664 at 2851.782 kb on + strand, within Psest_2664 at 2851.782 kb on + strand, within Psest_2664 at 2851.782 kb on + strand, within Psest_2664 at 2851.782 kb on + strand, within Psest_2664 at 2851.815 kb on + strand, within Psest_2664 at 2851.815 kb on + strand, within Psest_2664 at 2851.815 kb on + strand, within Psest_2664 at 2851.815 kb on + strand, within Psest_2664 at 2851.815 kb on + strand, within Psest_2664 at 2851.815 kb on + strand, within Psest_2664 at 2851.816 kb on - strand, within Psest_2664 at 2851.848 kb on + strand, within Psest_2664 at 2851.848 kb on + strand, within Psest_2664 at 2851.848 kb on + strand, within Psest_2664 at 2851.902 kb on + strand, within Psest_2664 at 2852.175 kb on + strand, within Psest_2664 at 2852.175 kb on + strand, within Psest_2664 at 2852.175 kb on + strand, within Psest_2664 at 2852.175 kb on + strand, within Psest_2664 at 2852.176 kb on - strand, within Psest_2664 at 2852.196 kb on + strand, within Psest_2664 at 2852.476 kb on + strand at 2852.476 kb on + strand at 2852.491 kb on + strand at 2852.515 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 2,850,681 + Psest_2663 0.26 +0.3 2,850,682 - Psest_2663 0.26 -0.8 2,850,682 - Psest_2663 0.26 -0.4 2,850,682 - Psest_2663 0.26 +0.1 2,850,796 - Psest_2663 0.39 +0.5 2,850,888 + Psest_2663 0.49 +0.7 2,850,888 + Psest_2663 0.49 +0.5 2,850,888 + Psest_2663 0.49 -2.9 2,850,888 + Psest_2663 0.49 +0.9 2,850,888 + Psest_2663 0.49 +1.4 2,850,888 + Psest_2663 0.49 -1.2 2,850,889 - Psest_2663 0.49 -0.1 2,850,889 - Psest_2663 0.49 -0.3 2,850,889 - Psest_2663 0.49 +0.4 2,850,889 - Psest_2663 0.49 -0.7 2,850,903 + Psest_2663 0.51 -1.1 2,850,903 + Psest_2663 0.51 -0.3 2,850,904 - Psest_2663 0.51 +0.6 2,850,904 - Psest_2663 0.51 -0.6 2,850,904 - Psest_2663 0.51 -0.0 2,850,908 - Psest_2663 0.51 +0.6 2,850,908 - Psest_2663 0.51 +0.4 2,851,332 + +1.3 2,851,357 - +0.5 2,851,357 - -0.1 2,851,357 - +0.1 2,851,357 - +1.0 2,851,357 - +0.8 2,851,357 - -1.1 2,851,378 + -1.0 2,851,379 - +0.8 2,851,379 - -0.8 2,851,379 - -0.1 2,851,467 + +0.7 2,851,468 - +0.5 2,851,468 - +0.4 2,851,468 - +0.5 2,851,782 + Psest_2664 0.29 +1.0 2,851,782 + Psest_2664 0.29 -0.7 2,851,782 + +1.2 2,851,782 + Psest_2664 0.29 +1.7 2,851,782 + Psest_2664 0.29 +2.0 2,851,782 + Psest_2664 0.29 +0.8 2,851,782 + Psest_2664 0.29 +0.6 2,851,782 + Psest_2664 0.29 +0.4 2,851,815 + Psest_2664 0.32 +2.7 2,851,815 + Psest_2664 0.32 +0.7 2,851,815 + Psest_2664 0.32 +0.4 2,851,815 + Psest_2664 0.32 +2.2 2,851,815 + Psest_2664 0.32 +1.0 2,851,815 + Psest_2664 0.32 +0.1 2,851,816 - Psest_2664 0.32 -0.6 2,851,848 + Psest_2664 0.36 -0.5 2,851,848 + Psest_2664 0.36 -1.2 2,851,848 + Psest_2664 0.36 +1.5 2,851,902 + Psest_2664 0.41 +1.4 2,852,175 + Psest_2664 0.69 -0.6 2,852,175 + Psest_2664 0.69 +0.2 2,852,175 + Psest_2664 0.69 +0.3 2,852,175 + Psest_2664 0.69 +0.5 2,852,176 - Psest_2664 0.69 +0.3 2,852,196 + Psest_2664 0.71 +1.6 2,852,476 + -0.6 2,852,476 + -0.7 2,852,491 + -0.3 2,852,515 + -0.1
Or see this region's nucleotide sequence