Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2467

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2466 and Psest_2467 overlap by 4 nucleotidesPsest_2467 and Psest_2468 are separated by 40 nucleotidesPsest_2468 and Psest_2469 are separated by 69 nucleotides Psest_2466: Psest_2466 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,637,305 to 2,638,162 _2466 Psest_2467: Psest_2467 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,638,159 to 2,639,058 _2467 Psest_2468: Psest_2468 - uncharacterized domain 1, at 2,639,099 to 2,639,542 _2468 Psest_2469: Psest_2469 - phosphohistidine phosphatase SixA, at 2,639,612 to 2,640,070 _2469 Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2637.283 kb on + strandat 2637.283 kb on + strandat 2637.571 kb on + strand, within Psest_2466at 2637.572 kb on - strand, within Psest_2466at 2637.572 kb on - strand, within Psest_2466at 2637.572 kb on - strand, within Psest_2466at 2637.574 kb on - strand, within Psest_2466at 2637.612 kb on - strand, within Psest_2466at 2637.612 kb on - strand, within Psest_2466at 2637.771 kb on + strand, within Psest_2466at 2637.772 kb on - strand, within Psest_2466at 2637.772 kb on - strand, within Psest_2466at 2637.788 kb on + strand, within Psest_2466at 2637.789 kb on - strand, within Psest_2466at 2637.908 kb on + strand, within Psest_2466at 2637.909 kb on - strand, within Psest_2466at 2637.924 kb on + strand, within Psest_2466at 2637.924 kb on + strand, within Psest_2466at 2637.940 kb on - strand, within Psest_2466at 2637.940 kb on - strand, within Psest_2466at 2637.940 kb on - strand, within Psest_2466at 2637.940 kb on - strand, within Psest_2466at 2638.177 kb on - strandat 2638.310 kb on + strand, within Psest_2467at 2638.310 kb on + strand, within Psest_2467at 2638.311 kb on - strand, within Psest_2467at 2638.416 kb on - strand, within Psest_2467at 2638.488 kb on + strand, within Psest_2467at 2638.490 kb on + strand, within Psest_2467at 2638.490 kb on + strand, within Psest_2467at 2638.490 kb on + strand, within Psest_2467at 2638.491 kb on - strand, within Psest_2467at 2638.491 kb on - strand, within Psest_2467at 2638.491 kb on - strand, within Psest_2467at 2638.491 kb on - strand, within Psest_2467at 2638.645 kb on + strand, within Psest_2467at 2638.703 kb on + strand, within Psest_2467at 2638.703 kb on + strand, within Psest_2467at 2638.703 kb on + strand, within Psest_2467at 2638.703 kb on + strand, within Psest_2467at 2638.703 kb on + strand, within Psest_2467at 2638.703 kb on + strand, within Psest_2467at 2638.703 kb on + strand, within Psest_2467at 2638.703 kb on + strand, within Psest_2467at 2638.704 kb on - strand, within Psest_2467at 2638.704 kb on - strand, within Psest_2467at 2638.704 kb on - strand, within Psest_2467at 2638.704 kb on - strand, within Psest_2467at 2638.920 kb on - strand, within Psest_2467at 2638.959 kb on + strand, within Psest_2467at 2638.959 kb on + strand, within Psest_2467at 2638.960 kb on - strand, within Psest_2467at 2639.080 kb on + strandat 2639.081 kb on - strandat 2639.081 kb on - strandat 2639.301 kb on + strand, within Psest_2468at 2639.301 kb on + strand, within Psest_2468at 2639.328 kb on + strand, within Psest_2468at 2639.329 kb on - strand, within Psest_2468at 2639.329 kb on - strand, within Psest_2468at 2639.329 kb on - strand, within Psest_2468at 2639.392 kb on - strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.462 kb on + strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.463 kb on - strand, within Psest_2468at 2639.465 kb on - strand, within Psest_2468at 2639.549 kb on + strandat 2639.563 kb on - strandat 2639.928 kb on - strand, within Psest_2469

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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2,637,283 + +0.7
2,637,283 + +0.4
2,637,571 + Psest_2466 0.31 -0.9
2,637,572 - Psest_2466 0.31 +0.1
2,637,572 - Psest_2466 0.31 -0.6
2,637,572 - Psest_2466 0.31 +0.1
2,637,574 - Psest_2466 0.31 -0.8
2,637,612 - Psest_2466 0.36 +1.3
2,637,612 - Psest_2466 0.36 +0.3
2,637,771 + Psest_2466 0.54 +1.0
2,637,772 - Psest_2466 0.54 -0.8
2,637,772 - Psest_2466 0.54 -0.7
2,637,788 + Psest_2466 0.56 +0.5
2,637,789 - Psest_2466 0.56 +0.0
2,637,908 + Psest_2466 0.70 +0.4
2,637,909 - Psest_2466 0.70 +1.2
2,637,924 + Psest_2466 0.72 +1.0
2,637,924 + Psest_2466 0.72 -0.1
2,637,940 - Psest_2466 0.74 +0.9
2,637,940 - Psest_2466 0.74 -2.9
2,637,940 - Psest_2466 0.74 +0.2
2,637,940 - Psest_2466 0.74 -1.2
2,638,177 - -1.1
2,638,310 + Psest_2467 0.17 +0.8
2,638,310 + Psest_2467 0.17 +0.1
2,638,311 - Psest_2467 0.17 +0.7
2,638,416 - Psest_2467 0.29 -0.7
2,638,488 + Psest_2467 0.37 +0.2
2,638,490 + Psest_2467 0.37 -0.2
2,638,490 + Psest_2467 0.37 +1.0
2,638,490 + Psest_2467 0.37 -0.3
2,638,491 - Psest_2467 0.37 +0.2
2,638,491 - Psest_2467 0.37 +1.1
2,638,491 - Psest_2467 0.37 +1.4
2,638,491 - Psest_2467 0.37 +0.6
2,638,645 + Psest_2467 0.54 -0.8
2,638,703 + Psest_2467 0.60 +2.3
2,638,703 + Psest_2467 0.60 +0.8
2,638,703 + Psest_2467 0.60 +0.9
2,638,703 + Psest_2467 0.60 -0.4
2,638,703 + Psest_2467 0.60 -0.2
2,638,703 + Psest_2467 0.60 +1.1
2,638,703 + Psest_2467 0.60 +1.9
2,638,703 + Psest_2467 0.60 +1.0
2,638,704 - Psest_2467 0.61 -0.1
2,638,704 - Psest_2467 0.61 -0.1
2,638,704 - Psest_2467 0.61 -0.1
2,638,704 - Psest_2467 0.61 +0.8
2,638,920 - Psest_2467 0.85 +0.7
2,638,959 + Psest_2467 0.89 +1.3
2,638,959 + Psest_2467 0.89 +0.3
2,638,960 - Psest_2467 0.89 +0.4
2,639,080 + -1.8
2,639,081 - -0.2
2,639,081 - +0.6
2,639,301 + Psest_2468 0.45 +0.6
2,639,301 + Psest_2468 0.45 +1.1
2,639,328 + Psest_2468 0.52 +0.9
2,639,329 - Psest_2468 0.52 -0.6
2,639,329 - Psest_2468 0.52 +0.9
2,639,329 - Psest_2468 0.52 +0.2
2,639,392 - Psest_2468 0.66 +0.4
2,639,462 + Psest_2468 0.82 +0.5
2,639,462 + Psest_2468 0.82 +1.2
2,639,462 + Psest_2468 0.82 +0.4
2,639,462 + Psest_2468 0.82 -0.0
2,639,462 + Psest_2468 0.82 +0.8
2,639,462 + Psest_2468 0.82 +0.1
2,639,462 + Psest_2468 0.82 +0.6
2,639,463 - Psest_2468 0.82 -1.4
2,639,463 - Psest_2468 0.82 -0.5
2,639,463 - Psest_2468 0.82 -0.8
2,639,463 - Psest_2468 0.82 -0.1
2,639,463 - Psest_2468 0.82 -1.6
2,639,463 - Psest_2468 0.82 +0.4
2,639,465 - Psest_2468 0.82 -0.2
2,639,549 + +0.7
2,639,563 - +0.2
2,639,928 - Psest_2469 0.69 -0.4

Or see this region's nucleotide sequence