Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1512 and Psest_1513 are separated by 33 nucleotides Psest_1513 and Psest_1514 are separated by 21 nucleotides Psest_1514 and Psest_1515 are separated by 227 nucleotides
Psest_1512: Psest_1512 - Predicted permease, at 1,611,651 to 1,612,727
_1512
Psest_1513: Psest_1513 - Peroxiredoxin, at 1,612,761 to 1,613,234
_1513
Psest_1514: Psest_1514 - Glycine cleavage system regulatory protein, at 1,613,256 to 1,613,816
_1514
Psest_1515: Psest_1515 - dihydrodipicolinate synthase, at 1,614,044 to 1,614,922
_1515
Position (kb)
1612
1613
1614 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1612.039 kb on + strand, within Psest_1512 at 1612.039 kb on + strand, within Psest_1512 at 1612.040 kb on - strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.285 kb on - strand, within Psest_1512 at 1612.285 kb on - strand, within Psest_1512 at 1612.285 kb on - strand, within Psest_1512 at 1612.285 kb on - strand, within Psest_1512 at 1612.362 kb on + strand, within Psest_1512 at 1612.362 kb on + strand, within Psest_1512 at 1612.362 kb on + strand, within Psest_1512 at 1612.362 kb on + strand, within Psest_1512 at 1612.363 kb on - strand, within Psest_1512 at 1612.363 kb on - strand, within Psest_1512 at 1612.411 kb on - strand, within Psest_1512 at 1612.411 kb on - strand, within Psest_1512 at 1612.488 kb on + strand, within Psest_1512 at 1612.489 kb on - strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.892 kb on - strand, within Psest_1513 at 1612.892 kb on - strand, within Psest_1513 at 1612.903 kb on + strand, within Psest_1513 at 1612.904 kb on - strand, within Psest_1513 at 1613.100 kb on - strand, within Psest_1513 at 1613.131 kb on + strand, within Psest_1513 at 1613.131 kb on + strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.417 kb on - strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.521 kb on + strand, within Psest_1514 at 1613.522 kb on - strand, within Psest_1514 at 1614.002 kb on + strand at 1614.002 kb on + strand at 1614.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 1,612,039 + Psest_1512 0.36 +2.2 1,612,039 + Psest_1512 0.36 +1.4 1,612,040 - Psest_1512 0.36 +0.4 1,612,143 + Psest_1512 0.46 +0.9 1,612,143 + Psest_1512 0.46 +1.3 1,612,143 + Psest_1512 0.46 -0.2 1,612,144 - Psest_1512 0.46 -0.1 1,612,144 - Psest_1512 0.46 -1.5 1,612,144 - Psest_1512 0.46 -0.6 1,612,284 + Psest_1512 0.59 -0.5 1,612,284 + Psest_1512 0.59 -0.6 1,612,284 + Psest_1512 0.59 +0.1 1,612,284 + Psest_1512 0.59 +1.3 1,612,284 + Psest_1512 0.59 +0.3 1,612,284 + Psest_1512 0.59 -0.1 1,612,284 + Psest_1512 0.59 -1.6 1,612,284 + Psest_1512 0.59 +0.3 1,612,284 + Psest_1512 0.59 +0.4 1,612,285 - Psest_1512 0.59 -1.4 1,612,285 - Psest_1512 0.59 -0.8 1,612,285 - Psest_1512 0.59 -2.1 1,612,285 - Psest_1512 0.59 +0.1 1,612,362 + Psest_1512 0.66 -0.1 1,612,362 + Psest_1512 0.66 +0.7 1,612,362 + Psest_1512 0.66 +1.1 1,612,362 + Psest_1512 0.66 -1.5 1,612,363 - Psest_1512 0.66 -0.2 1,612,363 - Psest_1512 0.66 -0.7 1,612,411 - Psest_1512 0.71 +0.4 1,612,411 - Psest_1512 0.71 -0.2 1,612,488 + Psest_1512 0.78 +1.4 1,612,489 - Psest_1512 0.78 -0.6 1,612,588 + Psest_1512 0.87 +0.8 1,612,588 + Psest_1512 0.87 -0.2 1,612,588 + Psest_1512 0.87 +0.9 1,612,588 + Psest_1512 0.87 -0.2 1,612,588 + Psest_1512 0.87 -0.1 1,612,892 - Psest_1513 0.28 -0.8 1,612,892 - Psest_1513 0.28 +0.1 1,612,903 + Psest_1513 0.30 +2.6 1,612,904 - Psest_1513 0.30 +0.5 1,613,100 - Psest_1513 0.72 -1.0 1,613,131 + Psest_1513 0.78 -0.1 1,613,131 + Psest_1513 0.78 +1.1 1,613,132 - Psest_1513 0.78 -2.4 1,613,132 - Psest_1513 0.78 +1.5 1,613,132 - Psest_1513 0.78 +0.1 1,613,132 - Psest_1513 0.78 +0.3 1,613,132 - Psest_1513 0.78 -0.3 1,613,132 - Psest_1513 0.78 -0.0 1,613,132 - Psest_1513 0.78 +0.2 1,613,132 - Psest_1513 0.78 +0.6 1,613,132 - Psest_1513 0.78 +0.6 1,613,132 - Psest_1513 0.78 -0.7 1,613,132 - Psest_1513 0.78 +2.1 1,613,132 - Psest_1513 0.78 +2.2 1,613,417 - Psest_1514 0.29 -2.4 1,613,512 + Psest_1514 0.46 -1.1 1,613,512 + Psest_1514 0.46 -0.3 1,613,512 + Psest_1514 0.46 -0.1 1,613,512 + Psest_1514 0.46 +0.3 1,613,512 + Psest_1514 0.46 +0.0 1,613,513 - Psest_1514 0.46 -0.5 1,613,513 - Psest_1514 0.46 +0.1 1,613,513 - Psest_1514 0.46 +0.0 1,613,513 - Psest_1514 0.46 +0.2 1,613,513 - Psest_1514 0.46 -0.1 1,613,521 + Psest_1514 0.47 +1.1 1,613,522 - Psest_1514 0.47 +0.2 1,614,002 + +0.1 1,614,002 + -0.3 1,614,002 + -0.7
Or see this region's nucleotide sequence