Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1513

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1512 and Psest_1513 are separated by 33 nucleotidesPsest_1513 and Psest_1514 are separated by 21 nucleotidesPsest_1514 and Psest_1515 are separated by 227 nucleotides Psest_1512: Psest_1512 - Predicted permease, at 1,611,651 to 1,612,727 _1512 Psest_1513: Psest_1513 - Peroxiredoxin, at 1,612,761 to 1,613,234 _1513 Psest_1514: Psest_1514 - Glycine cleavage system regulatory protein, at 1,613,256 to 1,613,816 _1514 Psest_1515: Psest_1515 - dihydrodipicolinate synthase, at 1,614,044 to 1,614,922 _1515 Position (kb) 1612 1613 1614Strain fitness (log2 ratio) -2 -1 0 1 2at 1612.039 kb on + strand, within Psest_1512at 1612.039 kb on + strand, within Psest_1512at 1612.040 kb on - strand, within Psest_1512at 1612.143 kb on + strand, within Psest_1512at 1612.143 kb on + strand, within Psest_1512at 1612.143 kb on + strand, within Psest_1512at 1612.144 kb on - strand, within Psest_1512at 1612.144 kb on - strand, within Psest_1512at 1612.144 kb on - strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.284 kb on + strand, within Psest_1512at 1612.285 kb on - strand, within Psest_1512at 1612.285 kb on - strand, within Psest_1512at 1612.285 kb on - strand, within Psest_1512at 1612.285 kb on - strand, within Psest_1512at 1612.362 kb on + strand, within Psest_1512at 1612.362 kb on + strand, within Psest_1512at 1612.362 kb on + strand, within Psest_1512at 1612.362 kb on + strand, within Psest_1512at 1612.363 kb on - strand, within Psest_1512at 1612.363 kb on - strand, within Psest_1512at 1612.411 kb on - strand, within Psest_1512at 1612.411 kb on - strand, within Psest_1512at 1612.488 kb on + strand, within Psest_1512at 1612.489 kb on - strand, within Psest_1512at 1612.588 kb on + strand, within Psest_1512at 1612.588 kb on + strand, within Psest_1512at 1612.588 kb on + strand, within Psest_1512at 1612.588 kb on + strand, within Psest_1512at 1612.588 kb on + strand, within Psest_1512at 1612.892 kb on - strand, within Psest_1513at 1612.892 kb on - strand, within Psest_1513at 1612.903 kb on + strand, within Psest_1513at 1612.904 kb on - strand, within Psest_1513at 1613.100 kb on - strand, within Psest_1513at 1613.131 kb on + strand, within Psest_1513at 1613.131 kb on + strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.132 kb on - strand, within Psest_1513at 1613.417 kb on - strand, within Psest_1514at 1613.512 kb on + strand, within Psest_1514at 1613.512 kb on + strand, within Psest_1514at 1613.512 kb on + strand, within Psest_1514at 1613.512 kb on + strand, within Psest_1514at 1613.512 kb on + strand, within Psest_1514at 1613.513 kb on - strand, within Psest_1514at 1613.513 kb on - strand, within Psest_1514at 1613.513 kb on - strand, within Psest_1514at 1613.513 kb on - strand, within Psest_1514at 1613.513 kb on - strand, within Psest_1514at 1613.521 kb on + strand, within Psest_1514at 1613.522 kb on - strand, within Psest_1514at 1614.002 kb on + strandat 1614.002 kb on + strandat 1614.002 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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1,612,039 + Psest_1512 0.36 +2.2
1,612,039 + Psest_1512 0.36 +1.4
1,612,040 - Psest_1512 0.36 +0.4
1,612,143 + Psest_1512 0.46 +0.9
1,612,143 + Psest_1512 0.46 +1.3
1,612,143 + Psest_1512 0.46 -0.2
1,612,144 - Psest_1512 0.46 -0.1
1,612,144 - Psest_1512 0.46 -1.5
1,612,144 - Psest_1512 0.46 -0.6
1,612,284 + Psest_1512 0.59 -0.5
1,612,284 + Psest_1512 0.59 -0.6
1,612,284 + Psest_1512 0.59 +0.1
1,612,284 + Psest_1512 0.59 +1.3
1,612,284 + Psest_1512 0.59 +0.3
1,612,284 + Psest_1512 0.59 -0.1
1,612,284 + Psest_1512 0.59 -1.6
1,612,284 + Psest_1512 0.59 +0.3
1,612,284 + Psest_1512 0.59 +0.4
1,612,285 - Psest_1512 0.59 -1.4
1,612,285 - Psest_1512 0.59 -0.8
1,612,285 - Psest_1512 0.59 -2.1
1,612,285 - Psest_1512 0.59 +0.1
1,612,362 + Psest_1512 0.66 -0.1
1,612,362 + Psest_1512 0.66 +0.7
1,612,362 + Psest_1512 0.66 +1.1
1,612,362 + Psest_1512 0.66 -1.5
1,612,363 - Psest_1512 0.66 -0.2
1,612,363 - Psest_1512 0.66 -0.7
1,612,411 - Psest_1512 0.71 +0.4
1,612,411 - Psest_1512 0.71 -0.2
1,612,488 + Psest_1512 0.78 +1.4
1,612,489 - Psest_1512 0.78 -0.6
1,612,588 + Psest_1512 0.87 +0.8
1,612,588 + Psest_1512 0.87 -0.2
1,612,588 + Psest_1512 0.87 +0.9
1,612,588 + Psest_1512 0.87 -0.2
1,612,588 + Psest_1512 0.87 -0.1
1,612,892 - Psest_1513 0.28 -0.8
1,612,892 - Psest_1513 0.28 +0.1
1,612,903 + Psest_1513 0.30 +2.6
1,612,904 - Psest_1513 0.30 +0.5
1,613,100 - Psest_1513 0.72 -1.0
1,613,131 + Psest_1513 0.78 -0.1
1,613,131 + Psest_1513 0.78 +1.1
1,613,132 - Psest_1513 0.78 -2.4
1,613,132 - Psest_1513 0.78 +1.5
1,613,132 - Psest_1513 0.78 +0.1
1,613,132 - Psest_1513 0.78 +0.3
1,613,132 - Psest_1513 0.78 -0.3
1,613,132 - Psest_1513 0.78 -0.0
1,613,132 - Psest_1513 0.78 +0.2
1,613,132 - Psest_1513 0.78 +0.6
1,613,132 - Psest_1513 0.78 +0.6
1,613,132 - Psest_1513 0.78 -0.7
1,613,132 - Psest_1513 0.78 +2.1
1,613,132 - Psest_1513 0.78 +2.2
1,613,417 - Psest_1514 0.29 -2.4
1,613,512 + Psest_1514 0.46 -1.1
1,613,512 + Psest_1514 0.46 -0.3
1,613,512 + Psest_1514 0.46 -0.1
1,613,512 + Psest_1514 0.46 +0.3
1,613,512 + Psest_1514 0.46 +0.0
1,613,513 - Psest_1514 0.46 -0.5
1,613,513 - Psest_1514 0.46 +0.1
1,613,513 - Psest_1514 0.46 +0.0
1,613,513 - Psest_1514 0.46 +0.2
1,613,513 - Psest_1514 0.46 -0.1
1,613,521 + Psest_1514 0.47 +1.1
1,613,522 - Psest_1514 0.47 +0.2
1,614,002 + +0.1
1,614,002 + -0.3
1,614,002 + -0.7

Or see this region's nucleotide sequence