Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1427

Experiment: Parabanic Acid (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1424 and Psest_1425 overlap by 4 nucleotidesPsest_1425 and Psest_1426 are separated by 2 nucleotidesPsest_1426 and Psest_1427 are separated by 5 nucleotidesPsest_1427 and Psest_1428 are separated by 13 nucleotides Psest_1424: Psest_1424 - Lipoate-protein ligase A, at 1,534,110 to 1,534,877 _1424 Psest_1425: Psest_1425 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes, at 1,534,874 to 1,535,575 _1425 Psest_1426: Psest_1426 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes, at 1,535,578 to 1,535,811 _1426 Psest_1427: Psest_1427 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 1,535,817 to 1,536,839 _1427 Psest_1428: Psest_1428 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 1,536,853 to 1,537,941 _1428 Position (kb) 1535 1536 1537Strain fitness (log2 ratio) -2 -1 0 1 2at 1534.884 kb on + strandat 1534.894 kb on + strandat 1535.579 kb on + strandat 1535.811 kb on + strandat 1535.811 kb on + strandat 1535.812 kb on - strandat 1536.008 kb on - strand, within Psest_1427at 1536.008 kb on - strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.233 kb on - strand, within Psest_1427at 1536.233 kb on - strand, within Psest_1427at 1536.233 kb on - strand, within Psest_1427at 1536.313 kb on + strand, within Psest_1427at 1536.314 kb on - strand, within Psest_1427at 1536.314 kb on - strand, within Psest_1427at 1536.314 kb on - strand, within Psest_1427at 1536.367 kb on + strand, within Psest_1427at 1536.421 kb on + strand, within Psest_1427at 1536.514 kb on + strand, within Psest_1427at 1536.515 kb on - strand, within Psest_1427at 1536.515 kb on - strand, within Psest_1427at 1536.515 kb on - strand, within Psest_1427at 1536.515 kb on - strand, within Psest_1427at 1536.538 kb on + strand, within Psest_1427at 1536.538 kb on + strand, within Psest_1427at 1536.538 kb on + strand, within Psest_1427at 1536.539 kb on - strand, within Psest_1427at 1536.539 kb on - strand, within Psest_1427at 1536.539 kb on - strand, within Psest_1427at 1536.688 kb on + strand, within Psest_1427at 1536.688 kb on + strand, within Psest_1427at 1536.689 kb on - strand, within Psest_1427at 1536.825 kb on + strandat 1536.826 kb on - strandat 1536.826 kb on - strandat 1536.826 kb on - strandat 1537.394 kb on - strand, within Psest_1428at 1537.394 kb on - strand, within Psest_1428at 1537.394 kb on - strand, within Psest_1428at 1537.555 kb on + strand, within Psest_1428at 1537.589 kb on + strand, within Psest_1428at 1537.589 kb on + strand, within Psest_1428at 1537.791 kb on - strand, within Psest_1428

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
remove
1,534,884 + +1.0
1,534,894 + -2.0
1,535,579 + +0.8
1,535,811 + -0.6
1,535,811 + +1.2
1,535,812 - -0.1
1,536,008 - Psest_1427 0.19 +0.1
1,536,008 - Psest_1427 0.19 +0.3
1,536,232 + Psest_1427 0.41 +0.1
1,536,232 + Psest_1427 0.41 +0.6
1,536,232 + Psest_1427 0.41 -0.5
1,536,232 + Psest_1427 0.41 +0.3
1,536,232 + Psest_1427 0.41 -0.5
1,536,233 - Psest_1427 0.41 -2.2
1,536,233 - Psest_1427 0.41 +0.1
1,536,233 - Psest_1427 0.41 +0.3
1,536,313 + Psest_1427 0.48 +0.5
1,536,314 - Psest_1427 0.49 +1.9
1,536,314 - Psest_1427 0.49 -0.7
1,536,314 - Psest_1427 0.49 -0.8
1,536,367 + Psest_1427 0.54 +0.1
1,536,421 + Psest_1427 0.59 -2.4
1,536,514 + Psest_1427 0.68 -0.4
1,536,515 - Psest_1427 0.68 +1.0
1,536,515 - Psest_1427 0.68 +0.7
1,536,515 - Psest_1427 0.68 +0.5
1,536,515 - Psest_1427 0.68 -1.3
1,536,538 + Psest_1427 0.70 +2.1
1,536,538 + Psest_1427 0.70 +0.7
1,536,538 + Psest_1427 0.70 +0.9
1,536,539 - Psest_1427 0.71 +2.1
1,536,539 - Psest_1427 0.71 +2.3
1,536,539 - Psest_1427 0.71 +1.8
1,536,688 + Psest_1427 0.85 +0.1
1,536,688 + Psest_1427 0.85 +1.6
1,536,689 - Psest_1427 0.85 -0.2
1,536,825 + +0.8
1,536,826 - -0.1
1,536,826 - +0.1
1,536,826 - -0.2
1,537,394 - Psest_1428 0.50 -0.0
1,537,394 - Psest_1428 0.50 -0.5
1,537,394 - Psest_1428 0.50 -0.8
1,537,555 + Psest_1428 0.64 -1.1
1,537,589 + Psest_1428 0.68 +0.5
1,537,589 + Psest_1428 0.68 -0.3
1,537,791 - Psest_1428 0.86 -1.1

Or see this region's nucleotide sequence