Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0931

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
1,008,167	-				+0.7
1,008,167	-				+1.2
1,008,219	-				+1.0
1,008,219	-				-0.4
1,008,343	+		Psest_0930	0.24	-0.9
1,008,343	+		Psest_0930	0.24	-2.0
1,008,344	-		Psest_0930	0.24	-0.8
1,008,344	-		Psest_0930	0.24	-1.0
1,008,385	+		Psest_0930	0.30	-1.7
1,008,385	+		Psest_0930	0.30	-0.6
1,008,386	-		Psest_0930	0.30	-1.8
1,008,395	+		Psest_0930	0.32	-0.4
1,008,395	+		Psest_0930	0.32	-1.4
1,008,395	+		Psest_0930	0.32	-0.0
1,008,395	+		Psest_0930	0.32	+0.4
1,008,395	+		Psest_0930	0.32	-1.1
1,008,396	-		Psest_0930	0.32	-1.3
1,008,396	-		Psest_0930	0.32	+0.0
1,008,396	-		Psest_0930	0.32	+0.3
1,008,396	-		Psest_0930	0.32	-0.1
1,008,483	+		Psest_0930	0.45	+0.2
1,008,483	+		Psest_0930	0.45	+0.7
1,008,483	+		Psest_0930	0.45	+1.4
1,008,484	-		Psest_0930	0.45	-2.0
1,008,484	-		Psest_0930	0.45	+0.7
1,008,484	-		Psest_0930	0.45	+1.6
1,008,557	+		Psest_0930	0.56	+0.1
1,008,561	+		Psest_0930	0.57	+1.8
1,008,561	+		Psest_0930	0.57	+0.2
1,008,561	+		Psest_0930	0.57	-0.4
1,008,562	-		Psest_0930	0.57	-0.7
1,008,562	-		Psest_0930	0.57	+1.6
1,008,562	-		Psest_0930	0.57	-0.1
1,008,562	-		Psest_0930	0.57	-0.6
1,008,617	+		Psest_0930	0.66	+0.6
1,008,617	+		Psest_0930	0.66	+1.6
1,008,617	+		Psest_0930	0.66	+0.2
1,008,617	+		Psest_0930	0.66	+0.1
1,008,617	+		Psest_0930	0.66	+0.7
1,008,617	+		Psest_0930	0.66	-0.5
1,008,617	+		Psest_0930	0.66	-1.3
1,008,617	+		Psest_0930	0.66	-1.0
1,008,617	+		Psest_0930	0.66	-0.1
1,008,618	-		Psest_0930	0.66	+0.5
1,008,618	-		Psest_0930	0.66	-0.5
1,008,618	-		Psest_0930	0.66	+2.4
1,008,618	-		Psest_0930	0.66	+0.6
1,008,618	-		Psest_0930	0.66	+1.9
1,008,618	-		Psest_0930	0.66	+1.1
1,008,618	-		Psest_0930	0.66	+2.2
1,008,618	-		Psest_0930	0.66	-0.2
1,008,618	-		Psest_0930	0.66	+2.1
1,008,736	+		Psest_0930	0.84	-0.0
1,008,835	+				+1.8
1,008,835	+				+0.1
1,008,835	+				+0.1
1,008,835	+				-0.5
1,008,835	+				+0.7
1,008,836	-				-0.4
1,008,836	-				+0.8
1,008,839	+				+0.4
1,008,857	-				-1.1
1,008,942	+				+1.6
1,008,994	-				+1.3
1,009,057	+				+1.1
1,009,059	+				-1.4
1,009,060	-				-0.1
1,009,090	+				+0.0
1,009,090	+				-1.7
1,009,090	+				-1.0
1,009,091	-				-0.8
1,009,091	-				-0.3
1,009,119	+				-0.2
1,009,119	+				-0.1
1,009,119	+				-1.2
1,009,120	-				+1.5
1,009,120	-				+1.5
1,009,120	-				-0.1
1,009,120	-				-0.4
1,009,120	-				-2.1
1,009,120	-				-0.4
1,009,123	+				-0.3
1,009,123	+				-1.5
1,009,124	-				+1.1
1,009,124	-				+0.7
1,009,183	+		Psest_0931	0.11	-0.3
1,009,238	+		Psest_0931	0.17	+0.1
1,009,238	+		Psest_0931	0.17	-0.6
1,009,238	+		Psest_0931	0.17	+2.2
1,009,238	+		Psest_0931	0.17	+0.8
1,009,239	-		Psest_0931	0.17	-1.2
1,009,239	-		Psest_0931	0.17	-0.4
1,009,239	-		Psest_0931	0.17	+0.2
1,009,239	-		Psest_0931	0.17	-1.6
1,009,273	+		Psest_0931	0.20	+2.1
1,009,273	+		Psest_0931	0.20	-0.9
1,009,273	+		Psest_0931	0.20	+0.1
1,009,273	+		Psest_0931	0.20	+1.0
1,009,273	+		Psest_0931	0.20	-1.2
1,009,273	+		Psest_0931	0.20	+0.4
1,009,274	-		Psest_0931	0.20	-2.5
1,009,274	-		Psest_0931	0.20	+1.1
1,009,274	-		Psest_0931	0.20	-0.4
1,009,274	-		Psest_0931	0.20	-1.2
1,009,274	-		Psest_0931	0.20	+0.1
1,009,274	-		Psest_0931	0.20	-0.1
1,009,274	-		Psest_0931	0.20	+0.3
1,009,327	+		Psest_0931	0.26	-0.1
1,009,327	+		Psest_0931	0.26	-0.2
1,009,372	+		Psest_0931	0.30	+0.4
1,009,372	+		Psest_0931	0.30	+1.5
1,009,372	+		Psest_0931	0.30	-1.2
1,009,372	+		Psest_0931	0.30	-0.1
1,009,372	+		Psest_0931	0.30	-1.0
1,009,373	-		Psest_0931	0.30	+0.0
1,009,373	-		Psest_0931	0.30	-0.0
1,009,378	-		Psest_0931	0.31	+0.5
1,009,387	-		Psest_0931	0.32	-0.6
1,009,387	-		Psest_0931	0.32	-1.8
1,009,387	-		Psest_0931	0.32	-0.0
1,009,476	+		Psest_0931	0.41	-0.3
1,009,499	+		Psest_0931	0.43	-0.6
1,009,500	-		Psest_0931	0.43	+0.2
1,009,606	+		Psest_0931	0.54	+0.1
1,009,669	-		Psest_0931	0.60	-2.0
1,009,669	-		Psest_0931	0.60	-2.6
1,009,669	-		Psest_0931	0.60	+1.2
1,009,685	-		Psest_0931	0.62	+1.1
1,009,787	-		Psest_0931	0.72	+0.5
1,009,802	-		Psest_0931	0.74	+1.1
1,009,826	+		Psest_0931	0.76	-0.4
1,009,827	-		Psest_0931	0.76	-2.1
1,009,918	-		Psest_0931	0.86	-0.4
1,009,934	+		Psest_0931	0.87	-0.2
1,009,935	-		Psest_0931	0.87	-0.0
1,009,935	-		Psest_0931	0.87	-0.3
1,009,935	-		Psest_0931	0.87	-2.2
1,009,935	-		Psest_0931	0.87	-0.8
1,009,935	-		Psest_0931	0.87	+1.9
1,009,935	-		Psest_0931	0.87	+0.0
1,009,949	+		Psest_0931	0.89	+0.6
1,009,949	+		Psest_0931	0.89	-1.1
1,009,950	-		Psest_0931	0.89	+0.0
1,009,950	-		Psest_0931	0.89	-1.1
1,009,950	-		Psest_0931	0.89	-1.7
1,010,006	-				+0.2
1,010,029	-				+0.6
1,010,029	-				+0.2
1,010,029	-				+0.7
1,010,040	+				-1.3
1,010,245	+		Psest_0932	0.22	-0.1
1,010,246	-		Psest_0932	0.22	-0.0
1,010,246	-		Psest_0932	0.22	-3.0
1,010,246	-		Psest_0932	0.22	-0.4
1,010,246	-		Psest_0932	0.22	+0.9
1,010,310	+		Psest_0932	0.33	+0.5
1,010,310	+		Psest_0932	0.33	+0.8
1,010,310	+		Psest_0932	0.33	-1.6
1,010,310	+		Psest_0932	0.33	+0.4
1,010,311	-		Psest_0932	0.33	-0.9
1,010,311	-		Psest_0932	0.33	-0.4
1,010,396	+		Psest_0932	0.46	-2.8
1,010,397	-		Psest_0932	0.46	+0.1
1,010,397	-		Psest_0932	0.46	-0.2
1,010,401	-		Psest_0932	0.47	+1.2
1,010,401	-		Psest_0932	0.47	+1.8
1,010,401	-		Psest_0932	0.47	-1.3
1,010,401	-		Psest_0932	0.47	-0.6
1,010,407	-		Psest_0932	0.48	-0.0
1,010,541	+		Psest_0932	0.69	-1.4
1,010,541	+		Psest_0932	0.69	+1.3
1,010,542	-		Psest_0932	0.69	+0.5
1,010,545	-		Psest_0932	0.70	-2.2
1,010,553	-		Psest_0932	0.71	-2.9
1,010,559	-		Psest_0932	0.72	+0.2
1,010,559	-		Psest_0932	0.72	+1.1
1,010,730	+				-0.8
1,010,731	-				+0.4
1,010,747	+				+1.2
1,010,818	-				+0.2
1,010,818	-				+2.0
1,010,818	-				+0.7
1,010,853	+				+0.7
1,010,861	+				-0.7
1,010,862	-				+0.6
1,010,881	-				-0.8
1,010,894	-				-1.1
1,010,986	+				-0.8
1,010,986	+				-0.2
1,010,986	+				-1.0
1,010,986	+				-0.4
1,010,987	-				+0.1
1,010,987	-				-0.1
1,010,999	-				+0.0
1,011,055	+				+0.3
1,011,055	+				-0.1