Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3967

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3965 and Psest_3966 are separated by 118 nucleotidesPsest_3966 and Psest_3967 are separated by 36 nucleotidesPsest_3967 and Psest_3968 are separated by 25 nucleotides Psest_3965: Psest_3965 - hypothetical protein, at 4,132,909 to 4,133,367 _3965 Psest_3966: Psest_3966 - Predicted thioesterase, at 4,133,486 to 4,133,917 _3966 Psest_3967: Psest_3967 - Alcohol dehydrogenase, class IV, at 4,133,954 to 4,135,117 _3967 Psest_3968: Psest_3968 - Acyl-CoA dehydrogenases, at 4,135,143 to 4,136,933 _3968 Position (kb) 4133 4134 4135 4136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4133.025 kb on - strand, within Psest_3965at 4133.025 kb on - strand, within Psest_3965at 4133.184 kb on - strand, within Psest_3965at 4133.184 kb on - strand, within Psest_3965at 4133.190 kb on + strand, within Psest_3965at 4133.308 kb on + strand, within Psest_3965at 4133.309 kb on - strand, within Psest_3965at 4133.309 kb on - strand, within Psest_3965at 4133.309 kb on - strand, within Psest_3965at 4133.311 kb on + strand, within Psest_3965at 4133.311 kb on + strand, within Psest_3965at 4133.312 kb on - strand, within Psest_3965at 4133.312 kb on - strand, within Psest_3965at 4133.341 kb on + strandat 4133.341 kb on + strandat 4133.341 kb on + strandat 4133.342 kb on - strandat 4133.342 kb on - strandat 4133.625 kb on + strand, within Psest_3966at 4133.660 kb on + strand, within Psest_3966at 4133.703 kb on + strand, within Psest_3966at 4133.703 kb on + strand, within Psest_3966at 4133.703 kb on + strand, within Psest_3966at 4133.704 kb on - strand, within Psest_3966at 4133.704 kb on - strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.778 kb on + strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.779 kb on - strand, within Psest_3966at 4133.809 kb on - strand, within Psest_3966at 4133.811 kb on + strand, within Psest_3966at 4133.811 kb on + strand, within Psest_3966at 4133.811 kb on + strand, within Psest_3966at 4133.812 kb on - strand, within Psest_3966at 4133.835 kb on + strand, within Psest_3966at 4133.835 kb on + strand, within Psest_3966at 4133.835 kb on + strand, within Psest_3966at 4133.835 kb on + strand, within Psest_3966at 4133.836 kb on - strand, within Psest_3966at 4133.836 kb on - strand, within Psest_3966at 4133.839 kb on + strand, within Psest_3966at 4133.839 kb on + strand, within Psest_3966at 4133.840 kb on - strand, within Psest_3966at 4133.840 kb on - strand, within Psest_3966at 4133.860 kb on + strand, within Psest_3966at 4133.860 kb on + strand, within Psest_3966at 4133.883 kb on + strandat 4133.883 kb on + strandat 4133.883 kb on + strandat 4133.959 kb on - strandat 4133.970 kb on + strandat 4133.970 kb on + strandat 4133.970 kb on + strandat 4133.970 kb on + strandat 4133.971 kb on - strandat 4134.153 kb on + strand, within Psest_3967at 4134.213 kb on + strand, within Psest_3967at 4134.214 kb on - strand, within Psest_3967at 4134.290 kb on - strand, within Psest_3967at 4134.312 kb on + strand, within Psest_3967at 4134.313 kb on - strand, within Psest_3967at 4134.507 kb on + strand, within Psest_3967at 4134.507 kb on + strand, within Psest_3967at 4134.508 kb on - strand, within Psest_3967at 4134.623 kb on + strand, within Psest_3967at 4134.750 kb on + strand, within Psest_3967at 4134.750 kb on + strand, within Psest_3967at 4134.751 kb on - strand, within Psest_3967at 4134.751 kb on - strand, within Psest_3967at 4134.914 kb on + strand, within Psest_3967at 4134.924 kb on + strand, within Psest_3967at 4134.924 kb on + strand, within Psest_3967at 4134.924 kb on + strand, within Psest_3967at 4134.924 kb on + strand, within Psest_3967at 4134.925 kb on - strand, within Psest_3967at 4134.925 kb on - strand, within Psest_3967at 4134.925 kb on - strand, within Psest_3967at 4134.991 kb on + strand, within Psest_3967at 4135.043 kb on + strandat 4135.043 kb on + strandat 4135.043 kb on + strandat 4135.044 kb on - strandat 4135.044 kb on - strandat 4135.243 kb on + strandat 4135.243 kb on + strandat 4135.244 kb on - strandat 4135.273 kb on + strandat 4135.273 kb on + strandat 4135.274 kb on - strandat 4135.274 kb on - strandat 4135.357 kb on + strand, within Psest_3968at 4135.357 kb on + strand, within Psest_3968at 4135.357 kb on + strand, within Psest_3968at 4135.357 kb on + strand, within Psest_3968at 4135.357 kb on + strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.591 kb on + strand, within Psest_3968at 4135.591 kb on + strand, within Psest_3968at 4135.592 kb on - strand, within Psest_3968at 4135.592 kb on - strand, within Psest_3968at 4135.592 kb on - strand, within Psest_3968at 4135.592 kb on - strand, within Psest_3968at 4135.681 kb on + strand, within Psest_3968at 4135.681 kb on + strand, within Psest_3968at 4135.681 kb on + strand, within Psest_3968at 4135.681 kb on + strand, within Psest_3968at 4135.682 kb on - strand, within Psest_3968at 4135.682 kb on - strand, within Psest_3968at 4135.872 kb on + strand, within Psest_3968at 4135.872 kb on + strand, within Psest_3968at 4135.873 kb on - strand, within Psest_3968

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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4,133,025 - Psest_3965 0.25 +0.6
4,133,025 - Psest_3965 0.25 -0.5
4,133,184 - Psest_3965 0.60 -0.3
4,133,184 - Psest_3965 0.60 +0.9
4,133,190 + Psest_3965 0.61 -2.1
4,133,308 + Psest_3965 0.87 -1.8
4,133,309 - Psest_3965 0.87 -2.4
4,133,309 - Psest_3965 0.87 -0.3
4,133,309 - Psest_3965 0.87 -1.0
4,133,311 + Psest_3965 0.88 -1.6
4,133,311 + Psest_3965 0.88 +0.8
4,133,312 - Psest_3965 0.88 -0.2
4,133,312 - Psest_3965 0.88 -0.2
4,133,341 + +1.6
4,133,341 + -0.1
4,133,341 + -0.7
4,133,342 - -1.0
4,133,342 - +0.3
4,133,625 + Psest_3966 0.32 +0.4
4,133,660 + Psest_3966 0.40 -1.5
4,133,703 + Psest_3966 0.50 +1.4
4,133,703 + Psest_3966 0.50 +1.2
4,133,703 + Psest_3966 0.50 +1.4
4,133,704 - Psest_3966 0.50 -0.1
4,133,704 - Psest_3966 0.50 -0.3
4,133,778 + Psest_3966 0.68 -1.9
4,133,778 + Psest_3966 0.68 +0.1
4,133,778 + Psest_3966 0.68 -0.8
4,133,778 + Psest_3966 0.68 -0.0
4,133,778 + Psest_3966 0.68 -1.9
4,133,778 + Psest_3966 0.68 -1.4
4,133,778 + Psest_3966 0.68 +0.9
4,133,778 + Psest_3966 0.68 +0.1
4,133,778 + Psest_3966 0.68 -3.1
4,133,778 + Psest_3966 0.68 -0.2
4,133,778 + Psest_3966 0.68 -1.1
4,133,778 + Psest_3966 0.68 +0.7
4,133,779 - Psest_3966 0.68 -1.0
4,133,779 - Psest_3966 0.68 +2.0
4,133,779 - Psest_3966 0.68 -0.5
4,133,779 - Psest_3966 0.68 -0.9
4,133,779 - Psest_3966 0.68 -1.1
4,133,779 - Psest_3966 0.68 +1.6
4,133,779 - Psest_3966 0.68 +0.0
4,133,779 - Psest_3966 0.68 -0.2
4,133,779 - Psest_3966 0.68 -1.4
4,133,779 - Psest_3966 0.68 +0.8
4,133,779 - Psest_3966 0.68 -1.2
4,133,779 - Psest_3966 0.68 -1.2
4,133,779 - Psest_3966 0.68 +0.9
4,133,779 - Psest_3966 0.68 +0.6
4,133,809 - Psest_3966 0.75 +0.8
4,133,811 + Psest_3966 0.75 -2.4
4,133,811 + Psest_3966 0.75 -0.2
4,133,811 + Psest_3966 0.75 -0.1
4,133,812 - Psest_3966 0.75 -2.5
4,133,835 + Psest_3966 0.81 +1.9
4,133,835 + Psest_3966 0.81 +0.4
4,133,835 + Psest_3966 0.81 +0.4
4,133,835 + Psest_3966 0.81 -2.3
4,133,836 - Psest_3966 0.81 -0.2
4,133,836 - Psest_3966 0.81 -0.6
4,133,839 + Psest_3966 0.82 +1.9
4,133,839 + Psest_3966 0.82 -0.5
4,133,840 - Psest_3966 0.82 +1.1
4,133,840 - Psest_3966 0.82 -2.5
4,133,860 + Psest_3966 0.87 +0.6
4,133,860 + Psest_3966 0.87 -0.4
4,133,883 + +0.6
4,133,883 + +0.2
4,133,883 + -1.1
4,133,959 - -0.4
4,133,970 + +0.4
4,133,970 + +0.5
4,133,970 + -0.1
4,133,970 + -0.4
4,133,971 - -0.7
4,134,153 + Psest_3967 0.17 +0.0
4,134,213 + Psest_3967 0.22 -0.2
4,134,214 - Psest_3967 0.22 -0.7
4,134,290 - Psest_3967 0.29 -1.1
4,134,312 + Psest_3967 0.31 -0.1
4,134,313 - Psest_3967 0.31 -0.2
4,134,507 + Psest_3967 0.48 -1.8
4,134,507 + Psest_3967 0.48 -1.3
4,134,508 - Psest_3967 0.48 +0.5
4,134,623 + Psest_3967 0.57 +1.0
4,134,750 + Psest_3967 0.68 +0.8
4,134,750 + Psest_3967 0.68 -0.1
4,134,751 - Psest_3967 0.68 -0.3
4,134,751 - Psest_3967 0.68 -0.8
4,134,914 + Psest_3967 0.82 -0.1
4,134,924 + Psest_3967 0.83 -1.7
4,134,924 + Psest_3967 0.83 -1.5
4,134,924 + Psest_3967 0.83 -0.6
4,134,924 + Psest_3967 0.83 +0.8
4,134,925 - Psest_3967 0.83 -1.3
4,134,925 - Psest_3967 0.83 +0.2
4,134,925 - Psest_3967 0.83 -0.1
4,134,991 + Psest_3967 0.89 +0.4
4,135,043 + +0.4
4,135,043 + -1.1
4,135,043 + -0.1
4,135,044 - -2.4
4,135,044 - -0.8
4,135,243 + +2.1
4,135,243 + -0.0
4,135,244 - +0.1
4,135,273 + -0.6
4,135,273 + -1.1
4,135,274 - -0.9
4,135,274 - +0.7
4,135,357 + Psest_3968 0.12 -2.2
4,135,357 + Psest_3968 0.12 +0.1
4,135,357 + Psest_3968 0.12 -3.1
4,135,357 + Psest_3968 0.12 +0.8
4,135,357 + Psest_3968 0.12 +0.2
4,135,358 - Psest_3968 0.12 -0.9
4,135,358 - Psest_3968 0.12 -1.1
4,135,358 - Psest_3968 0.12 +0.9
4,135,358 - Psest_3968 0.12 +0.3
4,135,358 - Psest_3968 0.12 +0.2
4,135,358 - Psest_3968 0.12 +1.4
4,135,591 + Psest_3968 0.25 -0.4
4,135,591 + Psest_3968 0.25 +0.0
4,135,592 - Psest_3968 0.25 -0.0
4,135,592 - Psest_3968 0.25 -0.9
4,135,592 - Psest_3968 0.25 +5.3
4,135,592 - Psest_3968 0.25 -0.3
4,135,681 + Psest_3968 0.30 -0.9
4,135,681 + Psest_3968 0.30 +1.2
4,135,681 + Psest_3968 0.30 -1.5
4,135,681 + Psest_3968 0.30 -0.9
4,135,682 - Psest_3968 0.30 -0.4
4,135,682 - Psest_3968 0.30 +0.0
4,135,872 + Psest_3968 0.41 -1.6
4,135,872 + Psest_3968 0.41 -0.4
4,135,873 - Psest_3968 0.41 +1.5

Or see this region's nucleotide sequence